PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_212030_dnsd.t1
Common NameSOVF_212030
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 475aa    MW: 53122.4 Da    PI: 6.8947
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_212030_dnsd.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.5e-13330376455
                        HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Sp_212030_dnsd.t1 330 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYITDLQ 376
                        799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.8E-4450226IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.085326375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.70E-14329380No hitNo description
SuperFamilySSF474599.42E-19329396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-18330392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-10330376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-15332381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MSVNCGIKEE DKAMLEDVVG IDACKFLMSR GCGEDFNTDF TPIGNGMLNL QQGLCQIVDN  60
SNWNYAIFWK IVSSKKDGRP VLIWGDGHCR NPLKEEGNGE TSKKDEAKKT VLEKLHACFG  120
KSQGRNFVAN LDKVSDIEML YLTSMYYWFW LDSSMGPAKC FTSGRPIWVS DHKTCSDQYQ  180
SRGQLAKLAN FQTVVFVPLK TGVLELGSVR MVMEEHSLLQ MVNHIFNGER EARSLQLQAK  240
AFPKIFGCEL SLGRSKPQPK LEDDGVFSAE SESHVGGGSN VEENGSNKLV SEINFRGLNP  300
EPEKAEELPL QPKPRKRGRK PANGREEPLN HVEAERQRRE KLNQRFYALR AVVPNISKMD  360
KASLLGDAIS YITDLQMKVK TLEAEKAIAN PNQKHMVIPE IDFQTREDDA LVHVSFPLDL  420
HPASSVVRTL RDNQVVAPEA NVSTTDNTIV HTFTIRTQNG GAENLKEKLQ AALSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-29324386264Transcription factor MYC2
5gnj_B7e-29324386264Transcription factor MYC2
5gnj_E7e-29324386264Transcription factor MYC2
5gnj_F7e-29324386264Transcription factor MYC2
5gnj_G7e-29324386264Transcription factor MYC2
5gnj_I7e-29324386264Transcription factor MYC2
5gnj_M7e-29324386264Transcription factor MYC2
5gnj_N7e-29324386264Transcription factor MYC2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021844273.10.0transcription factor bHLH3-like
SwissprotA0A3Q7H2161e-147MTB3_SOLLC; Transcription factor MTB3
TrEMBLA0A0K9Q9G30.0A0A0K9Q9G3_SPIOL; Uncharacterized protein
STRINGXP_010679205.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-138bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]