PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_192690_agzp.t1
Common NameSOVF_192690
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 538aa    MW: 59640 Da    PI: 8.2301
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_192690_agzp.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.28e-10376406540
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STC CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsK 40 
                        h + Er+RR++iN++f+ Lr+llP+      +Kl+K
  Sp_192690_agzp.t1 376 HMISERKRREKINESFQALRSLLPQG-----TKLNK 406
                        8899********************95.....34444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-9366406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.84E-8369406No hitNo description
PROSITE profilePS5088810.271371420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-8375406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-7376406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MHSFAASYVC LWSYSPDLNF LYCEEGHFLE EASSSTRGVS IPRRLFDEYK LSVFPVGNDL  60
VPGLAFRDTN PYLELQELDL QRLATIESQR HFYQEAKIKT AVFIGCEQGE IELGMSSIQQ  120
NLEKKMQNLF PSMDFPRPTI DQQSNCKPSP SSSQSMDSPE YTSLFYNFTG GGSSTFHLQQ  180
PEHPAAIRET QSIPTAVTMT AATTNAAIRE TQSIPVVVTM TATTTNVAIR ETQSSPATTT  240
ASIGVTHLHH HPLLQNVPFP TIETTDAALT KAYLAILSSP STSSTGGETS SCPYGYQVRR  300
KASAFGSFHP SGSGSGSGSG SGSGTSSSSS QLKRFDFRRQ TLLKRALAFY REINFRRIQE  360
LSLQGPSRPS SNQLHHMISE RKRREKINES FQALRSLLPQ GTKLNKRNHQ LMEAQLATRR  420
RVTTTTSGGV DDVSTNNERL SVKVTPADSS ESTTTSGARM LDLQIILRTE TQVPDLVIRI  480
LEFLKQVKEA SIISMEAQTH QGQVPTNWVT FRLKIEGNKW DESSFTESIR RLLADLVS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1379384ERKRRE
2380385RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021866520.10.0putative transcription factor bHLH041
TrEMBLA0A0K9QD400.0A0A0K9QD40_SPIOL; Uncharacterized protein
STRINGXP_010696570.11e-168(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.13e-33bHLH family protein