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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_170090_gcqt.t1 | ||||||||
Common Name | SOVF_170090 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | AP2 | ||||||||
Protein Properties | Length: 547aa MW: 60690.5 Da PI: 7.5543 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 46.2 | 1.1e-14 | 287 | 346 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ ++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+ ++ a++k++g Sp_170090_gcqt.t1 287 SQYRGVTKHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARSYDLAALKYWG 346 78*******************988886678446*************************97 PP | |||||||
2 | AP2 | 46.1 | 1.2e-14 | 391 | 440 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Sp_170090_gcqt.t1 391 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 440 9***************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.0E-11 | 287 | 346 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.97E-21 | 287 | 355 | No hit | No description |
SuperFamily | SSF54171 | 1.77E-15 | 287 | 356 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 18.584 | 288 | 354 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.2E-27 | 288 | 360 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.5E-14 | 288 | 355 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.7E-7 | 289 | 300 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.71E-26 | 389 | 450 | No hit | No description |
SuperFamily | SSF54171 | 4.32E-18 | 389 | 450 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.2E-34 | 390 | 454 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.2E-19 | 390 | 448 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.335 | 390 | 448 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.3E-10 | 391 | 440 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.7E-7 | 430 | 450 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007276 | Biological Process | gamete generation | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0042127 | Biological Process | regulation of cell proliferation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 547 aa Download sequence Send to blast |
MKRSSENDNS NGSNSSGNSS CSNWLGFSLS PYMKMEGCNS SVDEEEVVHH DYHHHYTHHH 60 QVQPQQQQQQ STVGMFVSHP LPQQQQQQQL NSGPICFENG DGGGENGGYF HTPLTVMPLK 120 SDGSLCLMEA FNRSHPPEEP KLENFLGISL DSIYRQQQQQ QQQLESYISA MSSYQGFSED 180 DLLKNWVTTV DNLSNGGSVS SATALAVVAA SSVSGDLQSL SLSISPGSQS SCATTDNRQI 240 TTTTGSGNDN CVGVVAMDTK KRGFGKIVQN KHTVHRKSID TFGQRTSQYR GVTKHRWTGR 300 YEAHLWDNSC KKEGQTRKGR QVYLGGYDME EKAARSYDLA ALKYWGLSTH TNFPIENYKQ 360 EIQDMKNMTR QEFVAHLRRK SSGFSRGASM YRGVTRHHQH GRWQARIGRV AGNKDLYLGT 420 FSTQEEAAEA YDVAAIKFRG TNAVTNFDIS RYHVEKIMSS NALLAGEQAR RNNKVELIEE 480 CPSSTENKRN ASSTGEWKMV PSFSLSPTQN MGSAAHFSSA SSLVTSLNSS REGSPDENMX 540 SAATHHN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00088 | SELEX | Transfer from AT4G37750 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021846186.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL1 | ||||
Swissprot | Q38914 | 1e-153 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A0K9QK70 | 0.0 | A0A0K9QK70_SPIOL; Uncharacterized protein | ||||
STRING | XP_010687600.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-131 | AP2 family protein |