PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_165180_zatn.t1
Common NameSOVF_165180
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family AP2
Protein Properties Length: 681aa    MW: 75543.4 Da    PI: 7.0456
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_165180_zatn.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2513.7e-16335394155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV+ ++++gr++A+++d  ++  g  ++ ++++lg ++t+e+Aa+a++ a++k++g
  Sp_165180_zatn.t1 335 SQYRGVTKHRWTGRYEAHLWDnSCKkEGqsRKgRQVYLGGYDTEEKAARAYDMAALKYWG 394
                        78*******************988886678446*************************98 PP
2AP246.96.6e-15437488155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Sp_165180_zatn.t1 437 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 488
                        57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.58E-22335402No hitNo description
PfamPF008472.5E-12335394IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-17335403IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-16336403IPR001471AP2/ERF domain
PROSITE profilePS5103219.651336402IPR001471AP2/ERF domain
SMARTSM003801.0E-30336408IPR001471AP2/ERF domain
PRINTSPR003674.1E-6337348IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-17437496IPR016177DNA-binding domain
CDDcd000184.18E-25437498No hitNo description
PfamPF008471.1E-9437488IPR001471AP2/ERF domain
PROSITE profilePS5103219.072438496IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-18438496IPR001471AP2/ERF domain
SMARTSM003801.9E-34438502IPR001471AP2/ERF domain
PRINTSPR003674.1E-6478498IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MSHHHQQQQQ QQQQQQQQQQ QQQQQQHVAS LNSSFSSHEN FLENNNIYAT NNDYYGGSST  60
TTTDHHQVHN NNGTNHNHHH HHNFFYSHPF SLMPLKSDGS LCLPQGMVQA IGGNCSSTTT  120
TTSATPKLED FFGTHHHYNH HNQQQQQQQQ QEVVHVQQQY PFYPQLYENS AGALQGKEHQ  180
VVGDQLPVCS MGIETEISAG LRNWVQRGYI GSSDQDHDHD QINGGDHNQS GVVTVVSSSS  240
SSNSNSTSTT TGGPMSAIGY ADLQSLSLSM SPGSQSSCVT GSHQNQIASA VGTTQSPSSM  300
VVMESSRKRG GEIIEHNNKQ IVHRKSLDTF GQRTSQYRGV TKHRWTGRYE AHLWDNSCKK  360
EGQSRKGRQV YLGGYDTEEK AARAYDMAAL KYWGPSTHIN FPLEDYQQQL EDMKNMTRQE  420
FVAHLRRKSS GFSRGASIYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD  480
IAAIKFRGTN AVTNFDIVRY DVDRIMASST LLARELARRT KEPLPLPPPQ PPQQQPPPPP  540
ENNNAEEEEL EKPDWKVVMY NSSQHQQQQS DQICGGGGGG SGGGGGANFS NESSLVTSLS  600
SSREDSPEKN NNNNNTNISS NSRSLPLAFT MPPSSATKLF TANNPASSIG TWINQPVELI  660
RAPSISSLPQ MPLFAAWADL H
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021861535.10.0AP2-like ethylene-responsive transcription factor ANT
TrEMBLA0A0K9QLK80.0A0A0K9QLK8_SPIOL; Uncharacterized protein
STRINGXP_010679674.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-126AP2 family protein