PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_131000_jnxq.t1 | ||||||||
Common Name | SOVF_131000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | CO-like | ||||||||
Protein Properties | Length: 386aa MW: 42381.8 Da PI: 6.0986 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.9 | 3.2e-06 | 25 | 56 | 3 | 34 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeH 34 +r C+++ l+C++++++lC C ++H Sp_131000_jnxq.t1 25 PRLCDTCRVATSLLYCKTDSSFLCGPCDAKIH 56 578*****9999*******************9 PP | |||||||
2 | zf-B_box | 24.8 | 4.6e-08 | 67 | 108 | 3 | 38 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 ++C+ +e+ ++ C+ + lC C + +H+ H+ Sp_131000_jnxq.t1 67 VWVCEVCEQAPAVVTCKADAAALCTACDQDIHSAntvssrHE 108 689*****************************6656666666 PP | |||||||
3 | CCT | 70.7 | 3.7e-24 | 320 | 363 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpRvKGrF+k++ Sp_131000_jnxq.t1 320 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRVKGRFAKRT 363 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 0.012 | 23 | 63 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.399 | 23 | 69 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.34E-7 | 26 | 69 | No hit | No description |
SMART | SM00336 | 1.8E-13 | 65 | 112 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.424 | 65 | 112 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 5.3E-6 | 66 | 110 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.92E-10 | 68 | 112 | No hit | No description |
PROSITE profile | PS51017 | 16.847 | 320 | 362 | IPR010402 | CCT domain |
Pfam | PF06203 | 3.9E-18 | 320 | 362 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MAATAVEDNN NTNIKGLLSG WGFTPRLCDT CRVATSLLYC KTDSSFLCGP CDAKIHPPTR 60 YPRHERVWVC EVCEQAPAVV TCKADAAALC TACDQDIHSA NTVSSRHERF PVIPFLDSPI 120 DAATARSVID NAAPYLVPDN LDAVPSLDNL INDEADAWLI PNPNNSFLYN DSDILNYSYN 180 CTNSATAPQF QQQDIKPSIV VVDENRSYAF TDSVVPTQSQ GNTNHFSTFS NNSATADSLF 240 DSSFNIDFTQ PNKQQKKNHH NFNHTQLFSP SLNYSVSSSD IGVVPDGNTS SITSEVSYNF 300 TKSTAAVDGG SSGGAPVMDR EARVLRYREK RKNRKFEKTI RYASRKAYAE TRPRVKGRFA 360 KRTDSNGTSE IDFAVDTGGY GVVPAF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021856630.1 | 0.0 | zinc finger protein CONSTANS-LIKE 3-like | ||||
TrEMBL | A0A0K9QX53 | 0.0 | A0A0K9QX53_SPIOL; Uncharacterized protein | ||||
STRING | XP_010688513.1 | 1e-153 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57660.1 | 3e-80 | CONSTANS-like 5 |