PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_131000_jnxq.t1
Common NameSOVF_131000
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family CO-like
Protein Properties Length: 386aa    MW: 42381.8 Da    PI: 6.0986
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_131000_jnxq.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.93.2e-062556334
           zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeH 34
                       +r C+++      l+C++++++lC  C  ++H
  Sp_131000_jnxq.t1 25 PRLCDTCRVATSLLYCKTDSSFLCGPCDAKIH 56
                       578*****9999*******************9 PP
2zf-B_box24.84.6e-0867108338
           zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 
                         ++C+ +e+ ++   C+ +   lC  C + +H+       H+
  Sp_131000_jnxq.t1  67 VWVCEVCEQAPAVVTCKADAAALCTACDQDIHSAntvssrHE 108
                        689*****************************6656666666 PP
3CCT70.73.7e-24320363144
                CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                        Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpRvKGrF+k++
  Sp_131000_jnxq.t1 320 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRVKGRFAKRT 363
                        9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003360.0122363IPR000315B-box-type zinc finger
PROSITE profilePS501199.3992369IPR000315B-box-type zinc finger
CDDcd000212.34E-72669No hitNo description
SMARTSM003361.8E-1365112IPR000315B-box-type zinc finger
PROSITE profilePS5011910.42465112IPR000315B-box-type zinc finger
PfamPF006435.3E-666110IPR000315B-box-type zinc finger
CDDcd000212.92E-1068112No hitNo description
PROSITE profilePS5101716.847320362IPR010402CCT domain
PfamPF062033.9E-18320362IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MAATAVEDNN NTNIKGLLSG WGFTPRLCDT CRVATSLLYC KTDSSFLCGP CDAKIHPPTR  60
YPRHERVWVC EVCEQAPAVV TCKADAAALC TACDQDIHSA NTVSSRHERF PVIPFLDSPI  120
DAATARSVID NAAPYLVPDN LDAVPSLDNL INDEADAWLI PNPNNSFLYN DSDILNYSYN  180
CTNSATAPQF QQQDIKPSIV VVDENRSYAF TDSVVPTQSQ GNTNHFSTFS NNSATADSLF  240
DSSFNIDFTQ PNKQQKKNHH NFNHTQLFSP SLNYSVSSSD IGVVPDGNTS SITSEVSYNF  300
TKSTAAVDGG SSGGAPVMDR EARVLRYREK RKNRKFEKTI RYASRKAYAE TRPRVKGRFA  360
KRTDSNGTSE IDFAVDTGGY GVVPAF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021856630.10.0zinc finger protein CONSTANS-LIKE 3-like
TrEMBLA0A0K9QX530.0A0A0K9QX53_SPIOL; Uncharacterized protein
STRINGXP_010688513.11e-153(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.13e-80CONSTANS-like 5