PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_083350_yipo.t2
Common NameSOVF_083350
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family G2-like
Protein Properties Length: 903aa    MW: 98251.5 Da    PI: 8.8919
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_083350_yipo.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like82.45e-26143196155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        kp+++Wt+ LH++F++av+ + G ++A+Pk+ile m+v+gLt+ehv+SHLQkYR+
  Sp_083350_yipo.t2 143 KPKMKWTSPLHNKFLNAVKCI-GYDRAVPKKILEYMNVPGLTREHVASHLQKYRI 196
                        79*******************.********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.34E-18141200IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-26141200IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-24143196IPR006447Myb domain, plants
PfamPF002495.8E-6145195IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 903 aa     Download sequence    Send to blast
MNGENPLYGL PLFPSVPKPR VLLVDVEPSS LELMTALLNS VKFAVMAAPD HDIEKIMEET  60
GLEDRSLLLD KPPSIIQLQN VWHFVTSRSK ARKIYTYKPS KNKSGAVRTR GNQANDPNNG  120
KGKELMVLSD EAEGGSQPKK ARKPKMKWTS PLHNKFLNAV KCIGYDRAVP KKILEYMNVP  180
GLTREHVASH LQKYRIYMRK LFAACHKTQN GFLPNWNQSP SLTGFTWSEF PDLIHNSLLL  240
NYATAVFMMG LEAEQQKQSR KKSTTSNKKK RTATTATATK TRSRKNNRKG SQPSSGNSNN  300
SSFEVGETSS LSPLSDQLQG LNGNISSENE NVNFPWNIVE SSTTTRESND EDDDDVDNDD  360
VEGGEKSSAD RVLELFGGYL GRLGRNGIRR MTMDVANQGV GAHHHQQLYG NVPNYYNFAI  420
GNNNNMRQQQ QSPVGSNMYN YMAQAQPGVP NYMAQPGMPG FFAQPTTSPM PTPSNFAAQP  480
AVSMPGMSSS GLQSTVPMAN MHNYFAQPTA SMPGLGLGLG SVPMAGISNN GVQQPTTSML  540
GLGLGLGSGP MAGLSNNGVQ QPTSFMSTMS NFAAQPTAAM ATMRNSAAPP TAPISPLASF  600
FNFADQAFAP AVRMSNVASQ PSAPPVWNFA PQPSTPMGSM YNFGTQPTSL ISNISEFRTQ  660
QPASVANMSN FAEQQKVHFE GRFPLPSLTL KVSSPLTRAG LTRAGFRPDK ALHLTFEKDL  720
SEFHTQQPAN VANMSNFAGQ QQPSGVNISD YVLNMPGFVS QGQTQPTTGS PVMNNITSDF  780
VEQQQRQSPD SIISGGTRNF LAQQTQTASP NSSYNLTNYQ QTQTVSPNSS YNMDMNSTPP  840
EETPMSNYFN TNSTQVAGNQ GYYSSSSSND VQRAQDTRPE NVDAYFSNID PHNGGNGADL  900
GDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-19142201463ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9RE330.0A0A0K9RE33_SPIOL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.16e-27response regulator 2