PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_070050_ghoo.t1
Common NameSOVF_070050
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB
Protein Properties Length: 467aa    MW: 52211.8 Da    PI: 7.097
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_070050_ghoo.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.6e-17451148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g W++eEde+l++ ++q+G g+W+++++  g+ R++k+c++rw +yl
  Sp_070050_ghoo.t1  4 KGLWSPEEDEKLLRHITQYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 51
                       678*******************************************97 PP
2Myb_DNA-binding475.7e-1557100146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg++++eE+ l+v++++ lG++ W+ Ia+ ++ gRt++++k+ w++
  Sp_070050_ghoo.t1  57 RGAFSQEEENLIVELHAVLGNK-WSQIAAQLP-GRTDNEIKNLWNS 100
                        89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-24154IPR009057Homeodomain-like
PROSITE profilePS5129426.448155IPR017930Myb domain
SuperFamilySSF466896.36E-29298IPR009057Homeodomain-like
SMARTSM007173.8E-13353IPR001005SANT/Myb domain
PfamPF002495.2E-15451IPR001005SANT/Myb domain
CDDcd001671.34E-11751No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2555106IPR009057Homeodomain-like
PROSITE profilePS5129421.17556106IPR017930Myb domain
SMARTSM007171.1E-1256104IPR001005SANT/Myb domain
PfamPF002491.4E-1357101IPR001005SANT/Myb domain
CDDcd001676.82E-95999No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0009733Biological Processresponse to auxin
GO:0010089Biological Processxylem development
GO:0010119Biological Processregulation of stomatal movement
GO:0010214Biological Processseed coat development
GO:0048364Biological Processroot development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
KLRKGLWSPE EDEKLLRHIT QYGHGCWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGAF  60
SQEEENLIVE LHAVLGNKWS QIAAQLPGRT DNEIKNLWNS CLKKKLRQRG IDPNTHKPLS  120
EVEIEEEKAK SSNSNNTSNS NSNNSNNNNR KTDKLSVSTM INNDNTNKAI NDPKSVSLSR  180
PNNNVNISSS TFSLAPPPPP PPLSTHEFFP DTLYGSFGFQ NNQAICFGSS IQQPSRTSYD  240
NNINTNSNNN NNHCHQYTSN MMPSIIPFMS TTDEAAYNGY HHQHMDVSST TTTTSTSHES  300
SSTTTNNNNN NNNNNNNISD HLNGNNNNNN NNNGSFFDSF SWATLTDHHA NSPGNKSNKD  360
DIQINSTNNI GLDGNNPEEI KWSEYLQSTT PLLLASQHNH HHHHQTSSSN TTNVYGDIKT  420
EATLMPFTSP SSWQPSPSLP PPMSSFHGTD MYNKDLQRLA EAFGQIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-2721065108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101107LKKKLRQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00134DAPTransfer from AT1G09540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021862020.10.0transcription factor MYB61-like
SwissprotQ8VZQ21e-80MYB61_ARATH; Transcription factor MYB61
TrEMBLA0A0K9RHR60.0A0A0K9RHR6_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010674459.11e-155(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.39e-80myb domain protein 55
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Matías-Hernández L, et al.
    AaMYB1 and its orthologue AtMYB61 affect terpene metabolism and trichome development in Artemisia annua and Arabidopsis thaliana.
    Plant J., 2017. 90(3): p. 520-534
    [PMID:28207974]