PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_060460_fefj.t1
Common NameSOVF_060460
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family WRKY
Protein Properties Length: 389aa    MW: 42047.2 Da    PI: 6.832
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_060460_fefj.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.35e-31215273259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+ver+++dpk++++tY++eHnh+
  Sp_060460_fefj.t1 215 SDMWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERNRSDPKMFIVTYTSEHNHP 273
                        79*************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081135.117209275IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.2E-31209275IPR003657WRKY domain
SuperFamilySSF1182901.83E-26212275IPR003657WRKY domain
SMARTSM007748.5E-38214274IPR003657WRKY domain
PfamPF031065.4E-26216273IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MENPPDWDLL AVVRSCCTTT TTTSATTSTP DLQPSPPPLP PTPPPSTSSQ FTPLPQQQQL  60
KQESYFSSSS PCSSTGGGVL FQFSNPFECS SSSTTSFELQ DICKPLICST IHNNNNNNNN  120
NNNNNNNNNN NSSCFQSLSS VSLASPVSSP SSVITGRSFG VGEQQQTQQI RGLIKPSHVI  180
FGTSPSITTS NAQRTKKRKN LMKKVCHVPA EGLSSDMWAW RKYGQKPIKG SPYPRGYYRC  240
SSSKGCLARK QVERNRSDPK MFIVTYTSEH NHPMPTHRNS LAGSTRQKPL SSAGTPPEQP  300
SCSSPSAASR SPLTEKSESK TEGDDMIKEE DDTSEMALSD LMLNDDFYVG FEQIDGSDGS  360
DCFSDHFSPS SDFPWLSSSS STAAAAGGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-22202276580Disease resistance protein RRS1
5w3x_D1e-22202276580Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 29, SIRK and its own promoters. {ECO:0000269|PubMed:11875555}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced after flagellin treatment. {ECO:0000269|PubMed:11875555}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021850481.10.0probable WRKY transcription factor 27
SwissprotO046091e-67WRK22_ARATH; WRKY transcription factor 22
TrEMBLA0A0K9RJ460.0A0A0K9RJ46_SPIOL; Uncharacterized protein
STRINGXP_010669828.11e-151(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.16e-64WRKY family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]
  3. Gkizi D, et al.
    The Innate Immune Signaling System as a Regulator of Disease Resistance and Induced Systemic Resistance Activity Against Verticillium dahliae.
    Mol. Plant Microbe Interact., 2016. 29(4): p. 313-23
    [PMID:26780421]
  4. Kloth KJ, et al.
    AtWRKY22 promotes susceptibility to aphids and modulates salicylic acid and jasmonic acid signalling.
    J. Exp. Bot., 2016. 67(11): p. 3383-96
    [PMID:27107291]
  5. Camborde L, et al.
    Detection of nucleic acid-protein interactions in plant leaves using fluorescence lifetime imaging microscopy.
    Nat Protoc, 2017. 12(9): p. 1933-1950
    [PMID:28837131]
  6. Wang S, et al.
    Bacillus cereus AR156 Activates Defense Responses to Pseudomonas syringae pv. tomato in Arabidopsis thaliana Similarly to flg22.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 311-322
    [PMID:29090631]