PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_060460_fefj.t1 | ||||||||
Common Name | SOVF_060460 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | WRKY | ||||||||
Protein Properties | Length: 389aa MW: 42047.2 Da PI: 6.832 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.3 | 5e-31 | 215 | 273 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+ver+++dpk++++tY++eHnh+ Sp_060460_fefj.t1 215 SDMWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERNRSDPKMFIVTYTSEHNHP 273 79*************************998****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 35.117 | 209 | 275 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 6.2E-31 | 209 | 275 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-26 | 212 | 275 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.5E-38 | 214 | 274 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.4E-26 | 216 | 273 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence Send to blast |
MENPPDWDLL AVVRSCCTTT TTTSATTSTP DLQPSPPPLP PTPPPSTSSQ FTPLPQQQQL 60 KQESYFSSSS PCSSTGGGVL FQFSNPFECS SSSTTSFELQ DICKPLICST IHNNNNNNNN 120 NNNNNNNNNN NSSCFQSLSS VSLASPVSSP SSVITGRSFG VGEQQQTQQI RGLIKPSHVI 180 FGTSPSITTS NAQRTKKRKN LMKKVCHVPA EGLSSDMWAW RKYGQKPIKG SPYPRGYYRC 240 SSSKGCLARK QVERNRSDPK MFIVTYTSEH NHPMPTHRNS LAGSTRQKPL SSAGTPPEQP 300 SCSSPSAASR SPLTEKSESK TEGDDMIKEE DDTSEMALSD LMLNDDFYVG FEQIDGSDGS 360 DCFSDHFSPS SDFPWLSSSS STAAAAGGS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 1e-22 | 202 | 276 | 5 | 80 | Disease resistance protein RRS1 |
5w3x_D | 1e-22 | 202 | 276 | 5 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 29, SIRK and its own promoters. {ECO:0000269|PubMed:11875555}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00422 | DAP | Transfer from AT4G01250 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced after flagellin treatment. {ECO:0000269|PubMed:11875555}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021850481.1 | 0.0 | probable WRKY transcription factor 27 | ||||
Swissprot | O04609 | 1e-67 | WRK22_ARATH; WRKY transcription factor 22 | ||||
TrEMBL | A0A0K9RJ46 | 0.0 | A0A0K9RJ46_SPIOL; Uncharacterized protein | ||||
STRING | XP_010669828.1 | 1e-151 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01250.1 | 6e-64 | WRKY family protein |