PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_039780_ijwt.t1

Common Name

SOVF_039780

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

SRS

Protein Properties

Length: 461aa MW: 50894.6 Da PI: 9.3998

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_039780_ijwt.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	25.3	4.5e-08	62	123	5	65
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrer.qqqlaaasskaaa 65 + +C CGn a+ C ++ C+ CC C+ hv + a r ++ ++ ++aa Sp_039780_ijwt.t1 62 KPKCIKCGNVARSRCPYQSCKSCCSKAQNPCHIHVLKPNSTLADRGAStNSTVPELQPNEAA 123 568*******************************9654444343333303333333333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	6.8E-6	64	119	IPR007818	Protein of unknown function DUF702

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence Send to blast
MAATATSSPV LSNNGSETSA NTGISTPPPP SATPPAAVKS PGLPTIMLQR PEPPKNLRGL 60 NKPKCIKCGN VARSRCPYQS CKSCCSKAQN PCHIHVLKPN STLADRGAST NSTVPELQPN 120 EAATPGPQSK AASLRQLSST FSQFNSVNVS VRSRKPLTRK EALTINEWRF AKLKEYKEAN 180 VEAENEAFDR YMQNISLLEE VFNVNNSEMP ESDENGSLVS TSGERMEIIS ETKVMLRSNP 240 IRTDAFRKRI RETIDQGLIK LQKTNSIDEP SNNLDNNEDD PVPKEDKSLW SELNFKLNKA 300 RNEEDLMVCM QKKSKITGQE KLSSGNKTEN TDLDSALESA VSLKLLKSSN NPSSPSLKSH 360 LRSVVIAAHL PPDQRQTAVP LGHHLRTPDL HRTTHFRRSL QPVSHRKPFR ARLQGVGNYT 420 GCLVIFDDVK TDAIYEETLE TVSNVAKVVD SLFNRSAKIM V

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence Send to blast

MAATATSSPV LSNNGSETSA NTGISTPPPP SATPPAAVKS PGLPTIMLQR PEPPKNLRGL  60
NKPKCIKCGN VARSRCPYQS CKSCCSKAQN PCHIHVLKPN STLADRGAST NSTVPELQPN  120
EAATPGPQSK AASLRQLSST FSQFNSVNVS VRSRKPLTRK EALTINEWRF AKLKEYKEAN  180
VEAENEAFDR YMQNISLLEE VFNVNNSEMP ESDENGSLVS TSGERMEIIS ETKVMLRSNP  240
IRTDAFRKRI RETIDQGLIK LQKTNSIDEP SNNLDNNEDD PVPKEDKSLW SELNFKLNKA  300
RNEEDLMVCM QKKSKITGQE KLSSGNKTEN TDLDSALESA VSLKLLKSSN NPSSPSLKSH  360
LRSVVIAAHL PPDQRQTAVP LGHHLRTPDL HRTTHFRRSL QPVSHRKPFR ARLQGVGNYT  420
GCLVIFDDVK TDAIYEETLE TVSNVAKVVD SLFNRSAKIM V

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021841479.1	0.0	uncharacterized protein LOC110781737
TrEMBL	A0A0K9RQJ1	0.0	A0A0K9RQJ1_SPIOL; Uncharacterized protein
STRING	XP_010677206.1	1e-164	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32730.1	3e-89