PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_009720_kgso.t1

Common Name

SOVF_009720

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

WRKY

Protein Properties

Length: 635aa MW: 69004.3 Da PI: 6.9641

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_009720_kgso.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.8	1.4e-30	358	416	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ Sp_009720_kgso.t1 358 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTILITTYEGTHNHP 416 7*********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.5E-33	342	418	IPR003657	WRKY domain
SuperFamily	SSF118290	8.5E-28	350	418	IPR003657	WRKY domain
PROSITE profile	PS50811	29.562	352	418	IPR003657	WRKY domain
SMART	SM00774	1.8E-36	357	417	IPR003657	WRKY domain
Pfam	PF03106	1.5E-26	359	416	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 635 aa Download sequence Send to blast
MDSRGWGLAL ESSSPPSDLN HPFRHKLNSN SNNQMFHGLE FPVNLHRRTE SDHQMEEVDD 60 ENHNNNNKEV DFFSDHNNKK SNNNSPVHRS SLSAAPHLIN HRVKEEASSR DHHQSAAVDH 120 PTSLLDNVNT GLHLLTTNTG SDQSTVDDGA TSDAEDKKTK NELVVLQAEL QRMNAENQKL 180 KSMLSQVSNN YNSLQMHLVT VMQQQHLRKT ESTQHETSMQ SKVEEKQSMV PRQFLDLVTG 240 ANTEADELTS QTLSDDGERT IDRSSSPLNS MEVASRINNN NNKMISNYDD VKRIREESPS 300 LGSDAQGSWV QNKVPRLMNN VNVVKATTSP TVDQTAAEAT MRKARVSVRA RSEAPMISDG 360 CQWRKYGQKM AKGNPCPRAY YRCTMAVGCP VRKQVQRCAE DRTILITTYE GTHNHPLPPA 420 AMAMASTTAA AASMLLSGSM PSGDGLMNPN FLARTILPCS SSMATISASA PFPTVTLDLT 480 HSPNPLQIRP PNTQATGPFQ IPFPPPNAQV GPNFFNSIPQ IFGQALLNSN HHNNNNQSKF 540 SGLQSSTPQA FDGAHLQHPT QNAAFADTLS AATAAIASDP NFTAALAAVI SSIMGGARPS 600 AENNNNARGN SPGGGATTSV NTANNVTSSS SMQQQ

Sequence ? help Back to Top

Protein Sequence Length: 635 aa Download sequence Send to blast

MDSRGWGLAL ESSSPPSDLN HPFRHKLNSN SNNQMFHGLE FPVNLHRRTE SDHQMEEVDD  60
ENHNNNNKEV DFFSDHNNKK SNNNSPVHRS SLSAAPHLIN HRVKEEASSR DHHQSAAVDH  120
PTSLLDNVNT GLHLLTTNTG SDQSTVDDGA TSDAEDKKTK NELVVLQAEL QRMNAENQKL  180
KSMLSQVSNN YNSLQMHLVT VMQQQHLRKT ESTQHETSMQ SKVEEKQSMV PRQFLDLVTG  240
ANTEADELTS QTLSDDGERT IDRSSSPLNS MEVASRINNN NNKMISNYDD VKRIREESPS  300
LGSDAQGSWV QNKVPRLMNN VNVVKATTSP TVDQTAAEAT MRKARVSVRA RSEAPMISDG  360
CQWRKYGQKM AKGNPCPRAY YRCTMAVGCP VRKQVQRCAE DRTILITTYE GTHNHPLPPA  420
AMAMASTTAA AASMLLSGSM PSGDGLMNPN FLARTILPCS SSMATISASA PFPTVTLDLT  480
HSPNPLQIRP PNTQATGPFQ IPFPPPNAQV GPNFFNSIPQ IFGQALLNSN HHNNNNQSKF  540
SGLQSSTPQA FDGAHLQHPT QNAAFADTLS AATAAIASDP NFTAALAAVI SSIMGGARPS  600
AENNNNARGN SPGGGATTSV NTANNVTSSS SMQQQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	6e-22	344	420	1	76	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269\|PubMed:25733771}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00428	DAP	Transfer from AT4G04450	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021853178.1	0.0	probable WRKY transcription factor 31
Swissprot	Q9XEC3	1e-147	WRK42_ARATH; WRKY transcription factor 42
TrEMBL	A0A0K9S1P8	0.0	A0A0K9S1P8_SPIOL; Uncharacterized protein
STRING	XP_010686806.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62300.1	1e-111	WRKY family protein