PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_006240_topm.t1 | ||||||||
Common Name | SOVF_006240 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | WRKY | ||||||||
Protein Properties | Length: 306aa MW: 34634.2 Da PI: 6.8593 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 92.7 | 2.8e-29 | 145 | 203 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D++nWrKYG K++kgs++prsYYrC+++ gC ++k+ve+s +dp+++ itY +eH h+ Sp_006240_topm.t1 145 SDKWNWRKYGEKVIKGSPYPRSYYRCSYPgGCLARKQVEQSISDPELFLITYMEEHSHP 203 7****************************9****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.3E-28 | 134 | 205 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.805 | 139 | 205 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.1E-26 | 142 | 205 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.9E-31 | 144 | 204 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.2E-24 | 146 | 203 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MMSEFSFDIA SDWDLQAIVK GRSITTSKNN NTMSSPCYDT WFESSSLDLD DYNYQLGHEN 60 STFIVEENEP LNHGISSSSS SPKNIVDSSM TNFDVYNSSS TDEPKKKAVD VSCANSTRAS 120 ILKRRKNKHK IVKVVQQAGG DRVMSDKWNW RKYGEKVIKG SPYPRSYYRC SYPGGCLARK 180 QVEQSISDPE LFLITYMEEH SHPYPTRRHS QAGRSARRFN NNSSTTKIAT KNESQNILMR 240 SISSESSTTN NKDDRVLVRG NEDGRHCCAE YVGGEGVNCM GSRVYNEDDF FAGLDYLEGL 300 NMDYYA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 7e-18 | 143 | 205 | 16 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 7e-18 | 143 | 205 | 16 | 77 | Probable WRKY transcription factor 4 |
5w3x_B | 8e-18 | 130 | 206 | 4 | 80 | Disease resistance protein RRS1 |
5w3x_D | 8e-18 | 130 | 206 | 4 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 104 | 125 | KKKAVDVSCANSTRASILKRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021866907.1 | 0.0 | WRKY transcription factor 22-like | ||||
TrEMBL | A0A0K9S161 | 0.0 | A0A0K9S161_SPIOL; Uncharacterized protein | ||||
STRING | XP_010676412.1 | 1e-111 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01250.1 | 2e-27 | WRKY family protein |