PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_006240_topm.t1
Common NameSOVF_006240
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family WRKY
Protein Properties Length: 306aa    MW: 34634.2 Da    PI: 6.8593
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_006240_topm.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.72.8e-29145203259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        +D++nWrKYG K++kgs++prsYYrC+++ gC ++k+ve+s +dp+++ itY +eH h+
  Sp_006240_topm.t1 145 SDKWNWRKYGEKVIKGSPYPRSYYRCSYPgGCLARKQVEQSISDPELFLITYMEEHSHP 203
                        7****************************9****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.3E-28134205IPR003657WRKY domain
PROSITE profilePS5081128.805139205IPR003657WRKY domain
SuperFamilySSF1182905.1E-26142205IPR003657WRKY domain
SMARTSM007744.9E-31144204IPR003657WRKY domain
PfamPF031065.2E-24146203IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MMSEFSFDIA SDWDLQAIVK GRSITTSKNN NTMSSPCYDT WFESSSLDLD DYNYQLGHEN  60
STFIVEENEP LNHGISSSSS SPKNIVDSSM TNFDVYNSSS TDEPKKKAVD VSCANSTRAS  120
ILKRRKNKHK IVKVVQQAGG DRVMSDKWNW RKYGEKVIKG SPYPRSYYRC SYPGGCLARK  180
QVEQSISDPE LFLITYMEEH SHPYPTRRHS QAGRSARRFN NNSSTTKIAT KNESQNILMR  240
SISSESSTTN NKDDRVLVRG NEDGRHCCAE YVGGEGVNCM GSRVYNEDDF FAGLDYLEGL  300
NMDYYA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-181432051677Probable WRKY transcription factor 4
2lex_A7e-181432051677Probable WRKY transcription factor 4
5w3x_B8e-18130206480Disease resistance protein RRS1
5w3x_D8e-18130206480Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104125KKKAVDVSCANSTRASILKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021866907.10.0WRKY transcription factor 22-like
TrEMBLA0A0K9S1610.0A0A0K9S161_SPIOL; Uncharacterized protein
STRINGXP_010676412.11e-111(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-27WRKY family protein