PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim12g099340.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

CAMTA

Protein Properties

Length: 916aa MW: 103920 Da PI: 7.1063

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim12g099340.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	151.8	1.6e-47	30	151	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpk.....sgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYah 87 +e k rwl+++ei+aiL n++ +++ ++ + pk sg+++L++rk++r+fr+DGy+wkkkkdgktv+E+he+LKvg+ e +++yYah Sopim12g099340.0.1 30 EEsKMRWLRPNEIHAILCNHKYFNINVKPVNLPKsnlilSGTIVLFDRKMLRNFRRDGYNWKKKKDGKTVKEAHEHLKVGNDERIHVYYAH 120 44499*******************988888873333469********************************************** PP CG-1 88 seenptfqrrcywlLeeelekivlvhylevk 118 +e+n+tf rrcywlL+++le++vlvhy+e++ Sopim12g099340.0.1 121 GEDNTTFVRRCYWLLDKTLEHVVLVHYRETQ 151 **************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	69.589	25	156	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	2.4E-69	28	151	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	6.3E-42	32	149	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	2.6E-5	359	461	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	1.82E-12	372	459	IPR014756	Immunoglobulin E-set
CDD	cd00204	5.41E-16	557	667	No hit	No description
Pfam	PF12796	4.1E-7	557	637	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	7.9E-17	557	671	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	4.04E-18	558	672	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.698	566	679	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	1.8E-6	608	637	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.701	608	640	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	5.84E-6	750	821	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	14	770	792	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.236	771	800	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.1	773	791	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0087	793	815	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	10.072	794	818	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	6.8E-4	795	815	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	25	869	891	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.37	870	899	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 916 aa Download sequence Send to blast
MESSVSGRLL GCEIHGFRTM QDLDIPNIME ESKMRWLRPN EIHAILCNHK YFNINVKPVN 60 LPKSNLILSG TIVLFDRKML RNFRRDGYNW KKKKDGKTVK EAHEHLKVGN DERIHVYYAH 120 GEDNTTFVRR CYWLLDKTLE HVVLVHYRET QEVSSNSTVA QGSPAAPVSS GSALSDPADL 180 SASWVLSGEL DSAVDQQYSA SRHAHLEPNR DMTVQNHEQR LLEINTLEWD DLLAPGDPNK 240 MVATQQAVGK TAYVQHTSYE QRNLCELNGY SFDGGVSSSL ERISTFNNSN EITFQTVDGQ 300 MTSSFEKNES GVMTVSTGDS LDSLNQDRLQ TQDSFGRWMN YLIKDSPESI DDPTPESSVS 360 TGQSYAREQI FNITEILPAW APSTEETKIC VIGQFHGEQS HLESSSLHCV CGDACFPAEV 420 LQPGVYRCIV SPQTPGLVNI YLSFDGNKPI SQVMSFEFRA PSVHVWTEPP ENKSDWDEFR 480 NQMRLAHLLF STSKSLNILS SKIHQDLLKD AKKFAGKCSH IIDDWACLIK SIEDKKVSVP 540 HAKDCLFELS LKTRLQEWLL ERVVEGCKIS EHDEQGQGVI HLCAILGYTW AVYPFSWSGL 600 SLDYRDKYGW TALHWAAYYG REKMVATLLS AGAKPNLVTD PTSENLGGCT ASDLASKNGH 660 EGLGAYLAEK ALVAQFKDMT LAGNISGSLQ TTTESINPGN FTEEELNLKD SLTAYRTAAD 720 AAARIQAAFR ERALKVRTKA VESSNPEMEA RNIIAAMKIQ HAFRNYEMQK QLAAAARIQY 780 RFRTWKMRKE FLHMRRQAIK IQAVFRGFQV RRQYRKIIWS VGVLEKALFR WRLKRKGLRG 840 LKLQSTQVTK PDDVEEDFFQ ASRKQAEERI ERSVVRVQAM FRSKQAQEQY RRMKLEHDKA 900 TLEYEGTLNP DTEMD*

Sequence ? help Back to Top

Protein Sequence Length: 916 aa Download sequence Send to blast

MESSVSGRLL GCEIHGFRTM QDLDIPNIME ESKMRWLRPN EIHAILCNHK YFNINVKPVN  60
LPKSNLILSG TIVLFDRKML RNFRRDGYNW KKKKDGKTVK EAHEHLKVGN DERIHVYYAH  120
GEDNTTFVRR CYWLLDKTLE HVVLVHYRET QEVSSNSTVA QGSPAAPVSS GSALSDPADL  180
SASWVLSGEL DSAVDQQYSA SRHAHLEPNR DMTVQNHEQR LLEINTLEWD DLLAPGDPNK  240
MVATQQAVGK TAYVQHTSYE QRNLCELNGY SFDGGVSSSL ERISTFNNSN EITFQTVDGQ  300
MTSSFEKNES GVMTVSTGDS LDSLNQDRLQ TQDSFGRWMN YLIKDSPESI DDPTPESSVS  360
TGQSYAREQI FNITEILPAW APSTEETKIC VIGQFHGEQS HLESSSLHCV CGDACFPAEV  420
LQPGVYRCIV SPQTPGLVNI YLSFDGNKPI SQVMSFEFRA PSVHVWTEPP ENKSDWDEFR  480
NQMRLAHLLF STSKSLNILS SKIHQDLLKD AKKFAGKCSH IIDDWACLIK SIEDKKVSVP  540
HAKDCLFELS LKTRLQEWLL ERVVEGCKIS EHDEQGQGVI HLCAILGYTW AVYPFSWSGL  600
SLDYRDKYGW TALHWAAYYG REKMVATLLS AGAKPNLVTD PTSENLGGCT ASDLASKNGH  660
EGLGAYLAEK ALVAQFKDMT LAGNISGSLQ TTTESINPGN FTEEELNLKD SLTAYRTAAD  720
AAARIQAAFR ERALKVRTKA VESSNPEMEA RNIIAAMKIQ HAFRNYEMQK QLAAAARIQY  780
RFRTWKMRKE FLHMRRQAIK IQAVFRGFQV RRQYRKIIWS VGVLEKALFR WRLKRKGLRG  840
LKLQSTQVTK PDDVEEDFFQ ASRKQAEERI ERSVVRVQAM FRSKQAQEQY RRMKLEHDKA  900
TLEYEGTLNP DTEMD*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN566051	0.0	JN566051.1 Solanum lycopersicum calmodulin-binding transcription factor SR3L mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001266140.1	0.0	calmodulin-binding transcription factor SR3L
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	H8ZRY6	0.0	H8ZRY6_SOLLC; Calmodulin-binding transcription factor SR3L
STRING	Solyc12g099340.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4565	22	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]