PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim11g069890.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | TALE | ||||||||
Protein Properties | Length: 581aa MW: 64479.5 Da PI: 7.2741 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.8 | 2.1e-09 | 383 | 415 | 22 | 54 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 ++yp+ +++ LA+++gLt +qV++WF N R + Sopim11g069890.0.1 383 HPYPTDSDKHMLASQTGLTRNQVSNWFINARVR 415 89*****************************87 PP | |||||||
2 | BELL | 101.9 | 4.8e-33 | 236 | 301 | 7 | 72 |
BELL 7 kkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +kkakL+ ++ee++krYkqy++q+q+v+ssFe+vagl +a+pY+slAlk++ +hF++L++ai++++ Sopim11g069890.0.1 236 QKKAKLIFMQEEICKRYKQYHQQMQMVVSSFETVAGLSAATPYISLALKTVVQHFKSLRNAITDHL 301 79************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 3.1E-39 | 154 | 299 | IPR006563 | POX domain |
Pfam | PF07526 | 1.3E-37 | 161 | 298 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.904 | 356 | 419 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.9E-9 | 359 | 423 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.39E-11 | 359 | 420 | No hit | No description |
SuperFamily | SSF46689 | 5.56E-17 | 361 | 425 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.4E-28 | 362 | 423 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 5.2E-18 | 376 | 415 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 581 aa Download sequence Send to blast |
MKFIYILYIH IYIFAGKLIG IFTGLEMSDQ VSEFHVAQHS RRERLRITSS EELDIIHQYG 60 NISYDPSVVL SSSEMINFAT TTTGTTDVAQ NCSNWRSLQH SSCGWNNVTN FNSSGSVIET 120 NNYLSPMFVG GERGVLSGSL NLNSSSIDEK PNFYGGFNEL SKFLRPAQQL LDELCDLAAG 180 SSNVIKCSNF SKKVRDGFRV SCDVNAAAES SSGGGGGGVG DSSGLNESNV CPEYLQKKAK 240 LIFMQEEICK RYKQYHQQMQ MVVSSFETVA GLSAATPYIS LALKTVVQHF KSLRNAITDH 300 LKNIRQALGE DLPSPASGMS NKGDGNSSRL KFVDQTSLHK QKSGSTAGVA FLESQQHVWR 360 PQRGLPERAV AILRAWLFDH FLHPYPTDSD KHMLASQTGL TRNQVSNWFI NARVRVWKPM 420 VEEIHMLETK GGDPTRKSDV NKLVTERTNH VNCGQHLSYV LLNMSGVVMP EKQEICHGGI 480 GPSERLDESS SDHHMWRNQE KRSRIECHNI SDGSSMDGSL MGFVPHQRNG VEIGGNIGDV 540 SLTLGLRQNA EAAQQQQQLQ LHEHRLRQQF GGHIIHDFVD * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 6e-17 | 365 | 422 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 6e-17 | 365 | 422 | 1 | 58 | Homeobox protein Meis1 |
5bng_A | 7e-17 | 365 | 423 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 7e-17 | 365 | 423 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975523 | 0.0 | HG975523.1 Solanum lycopersicum chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004251168.1 | 0.0 | BEL1-like homeodomain protein 9 | ||||
Refseq | XP_010313437.1 | 0.0 | BEL1-like homeodomain protein 9 | ||||
TrEMBL | A0A3Q7J0B5 | 0.0 | A0A3Q7J0B5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc11g069890.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8720 | 22 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27990.1 | 1e-74 | BEL1-like homeodomain 8 |