PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim08g077450.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

SRS

Protein Properties

Length: 374aa MW: 41416.3 Da PI: 5.7809

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim08g077450.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	25	5.2e-08	50	85	5	40
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvk 40 + +C CGn a+ C ++ C+ CC C+ hv Sopim08g077450.0.1 50 KPKCIKCGNVARSRCPFQSCKSCCAKAQNPCHIHVL 85 568*******************************94 PP

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MAASSPALSN SADNAPSPAP APAVPTATAA AAFSSLPTTN ASKNLRGLNK PKCIKCGNVA 60 RSRCPFQSCK SCCAKAQNPC HIHVLKGGST LPDKIPASGS PVVDQQSTEA SHAGSSHRAV 120 SLRQLSTNFA QFNNLQTPLR SRRPLSRKDA QVINEWRFMQ LKEYRESNIA AENEAFDRYM 180 QNIGLLEEVF GVNSAEDENN EDGSTEDENE AMMNRVKLQL RSDPVRIENT RKRMQYVIDQ 240 GLRKGRKLEA GDNATDLNDL DALGKKKKAK TAEAEHVAAF ADLMDKLNKA RNEEDLKVCW 300 EMKSQLFNQP KKEKQTEPED AEASNEQSLK TSDPPIMPWG HSQPKWFSTV TIDDEELRRI 360 NEEFDSLEDI EEL*

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MAASSPALSN SADNAPSPAP APAVPTATAA AAFSSLPTTN ASKNLRGLNK PKCIKCGNVA  60
RSRCPFQSCK SCCAKAQNPC HIHVLKGGST LPDKIPASGS PVVDQQSTEA SHAGSSHRAV  120
SLRQLSTNFA QFNNLQTPLR SRRPLSRKDA QVINEWRFMQ LKEYRESNIA AENEAFDRYM  180
QNIGLLEEVF GVNSAEDENN EDGSTEDENE AMMNRVKLQL RSDPVRIENT RKRMQYVIDQ  240
GLRKGRKLEA GDNATDLNDL DALGKKKKAK TAEAEHVAAF ADLMDKLNKA RNEEDLKVCW  300
EMKSQLFNQP KKEKQTEPED AEASNEQSLK TSDPPIMPWG HSQPKWFSTV TIDDEELRRI  360
NEEFDSLEDI EEL*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975520	0.0	HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004245851.1	0.0	uncharacterized protein LOC101256112
TrEMBL	A0A3Q7INC1	0.0	A0A3Q7INC1_SOLLC; Uncharacterized protein
STRING	Solyc08g077450.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8544	11	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32730.1	6e-84