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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim08g007020.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 184aa MW: 20817.3 Da PI: 9.3615 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 74.4 | 2.8e-23 | 58 | 129 | 54 | 122 |
NAM 54 eekewyfFskrdkkyatgkrknra...tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWv 122 ++ +w+fF +rdkky++g+r+nra tk+gyW+atgkd +v+ ++ e+vg +ktLvfy+gr+p g ktdW+ Sopim08g007020.0.1 58 SRYRWFFFYPRDKKYSNGSRANRAiraTKAGYWNATGKDGKVVFHEPEVVGYRKTLVFYQGRSPLGDKTDWM 129 3349***************9999645588***************9**************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 21.703 | 10 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.2E-9 | 55 | 129 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.79E-21 | 56 | 129 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MRGGEKGFCW WFGFRQRRDS GGCDSISLAS RTMKRGGGGN DALEMVEISR TEIFPAKSRY 60 RWFFFYPRDK KYSNGSRANR AIRATKAGYW NATGKDGKVV FHEPEVVGYR KTLVFYQGRS 120 PLGDKTDWMD DECPRYEFPN VASWQPNDRI EVTTSSTSPL KFGEVEPSGD LSSFGCVSPY 180 SIH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-16 | 23 | 132 | 26 | 139 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-16 | 23 | 132 | 26 | 139 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-16 | 23 | 132 | 26 | 139 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-16 | 23 | 132 | 26 | 139 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-16 | 23 | 132 | 29 | 142 | NAC domain-containing protein 19 |
3swm_B | 5e-16 | 23 | 132 | 29 | 142 | NAC domain-containing protein 19 |
3swm_C | 5e-16 | 23 | 132 | 29 | 142 | NAC domain-containing protein 19 |
3swm_D | 5e-16 | 23 | 132 | 29 | 142 | NAC domain-containing protein 19 |
3swp_A | 5e-16 | 23 | 132 | 29 | 142 | NAC domain-containing protein 19 |
3swp_B | 5e-16 | 23 | 132 | 29 | 142 | NAC domain-containing protein 19 |
3swp_C | 5e-16 | 23 | 132 | 29 | 142 | NAC domain-containing protein 19 |
3swp_D | 5e-16 | 23 | 132 | 29 | 142 | NAC domain-containing protein 19 |
4dul_A | 4e-16 | 23 | 132 | 26 | 139 | NAC domain-containing protein 19 |
4dul_B | 4e-16 | 23 | 132 | 26 | 139 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975520 | 1e-130 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009760809.1 | 9e-28 | PREDICTED: protein ATAF2-like | ||||
Refseq | XP_016501877.1 | 9e-28 | PREDICTED: NAC domain-containing protein 86-like | ||||
TrEMBL | A0A3Q7HHL9 | 1e-95 | A0A3Q7HHL9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g007020.1.1 | 1e-134 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA28776 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17980.1 | 3e-26 | NAC domain containing protein 71 |