PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim08g007020.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NAC

Protein Properties

Length: 184aa MW: 20817.3 Da PI: 9.3615

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim08g007020.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	74.4	2.8e-23	58	129	54	122
NAM 54 eekewyfFskrdkkyatgkrknra...tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWv 122 ++ +w+fF +rdkky++g+r+nra tk+gyW+atgkd +v+ ++ e+vg +ktLvfy+gr+p g ktdW+ Sopim08g007020.0.1 58 SRYRWFFFYPRDKKYSNGSRANRAiraTKAGYWNATGKDGKVVFHEPEVVGYRKTLVFYQGRSPLGDKTDWM 129 3349*************9999645588***********9************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	21.703	10	157	IPR003441	NAC domain
Pfam	PF02365	5.2E-9	55	129	IPR003441	NAC domain
SuperFamily	SSF101941	3.79E-21	56	129	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MRGGEKGFCW WFGFRQRRDS GGCDSISLAS RTMKRGGGGN DALEMVEISR TEIFPAKSRY 60 RWFFFYPRDK KYSNGSRANR AIRATKAGYW NATGKDGKVV FHEPEVVGYR KTLVFYQGRS 120 PLGDKTDWMD DECPRYEFPN VASWQPNDRI EVTTSSTSPL KFGEVEPSGD LSSFGCVSPY 180 SIH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-16	23	132	26	139	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-16	23	132	26	139	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-16	23	132	26	139	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-16	23	132	26	139	NO APICAL MERISTEM PROTEIN
3swm_A	5e-16	23	132	29	142	NAC domain-containing protein 19
3swm_B	5e-16	23	132	29	142	NAC domain-containing protein 19
3swm_C	5e-16	23	132	29	142	NAC domain-containing protein 19
3swm_D	5e-16	23	132	29	142	NAC domain-containing protein 19
3swp_A	5e-16	23	132	29	142	NAC domain-containing protein 19
3swp_B	5e-16	23	132	29	142	NAC domain-containing protein 19
3swp_C	5e-16	23	132	29	142	NAC domain-containing protein 19
3swp_D	5e-16	23	132	29	142	NAC domain-containing protein 19
4dul_A	4e-16	23	132	26	139	NAC domain-containing protein 19
4dul_B	4e-16	23	132	26	139	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975520	1e-130	HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009760809.1	9e-28	PREDICTED: protein ATAF2-like
Refseq	XP_016501877.1	9e-28	PREDICTED: NAC domain-containing protein 86-like
TrEMBL	A0A3Q7HHL9	1e-95	A0A3Q7HHL9_SOLLC; Uncharacterized protein
STRING	Solyc08g007020.1.1	1e-134	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA28776	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17980.1	3e-26	NAC domain containing protein 71