PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim06g008200.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | G2-like | ||||||||
Protein Properties | Length: 477aa MW: 51755.4 Da PI: 4.7409 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 108.1 | 4.7e-34 | 263 | 317 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe+Fveav++LGGse+AtPk +l+lmkv+gLt++hvkSHLQkYR+ Sopim06g008200.0.1 263 KQRMRWTPELHEAFVEAVNKLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRT 317 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.436 | 260 | 320 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-31 | 261 | 319 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.73E-18 | 261 | 317 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.7E-25 | 263 | 317 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.9E-10 | 265 | 316 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 4.1E-24 | 348 | 395 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 477 aa Download sequence Send to blast |
MEARPALSVQ RTGAHQLSNF GASGAHSSLP VLQTSLEEKY PKLPGSALSS FPSNSGAVGH 60 LFSSPSEFST NLDFSSVLPY DEHLAPATFI SQPTINEASI PLANSGVLQG AASSQYVNVN 120 SESWCTELLP DYLDYSVNAP VQNTQLDCRN SDDCQIPPED PSKQSDWPEW ADLVMSDDDA 180 LTSSWMVDTS IADAEPKMQY QEQNQLSNFP VHQVQPFQQI PTASVETSAV VPASVETSAV 240 VPASVETSAV VPASSTGSGS SSKQRMRWTP ELHEAFVEAV NKLGGSERAT PKGVLKLMKV 300 EGLTIYHVKS HLQKYRTARY KPEASEGSSE KKESSIGDLS ALDLKTGIEI TEALRLQMEV 360 QKQLHEQLEI QRNLQLRIEE QGRCLQMMFE KQCKSMPGID LAKGSSSMAE DASAQLNDAV 420 QSSSNKNDPG ASLVGHHEAG SHTTQQLVRE KQKEHEREDI TSSSNSPPTK RAKVDE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-32 | 263 | 321 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-32 | 263 | 321 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-32 | 263 | 321 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-32 | 263 | 321 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-32 | 263 | 321 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-32 | 263 | 321 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-32 | 263 | 321 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-32 | 263 | 321 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975518 | 0.0 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004240480.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 1 isoform X1 | ||||
TrEMBL | A0A3Q7GPJ7 | 0.0 | A0A3Q7GPJ7_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g008200.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2753 | 23 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28610.1 | 2e-78 | phosphate starvation response 1 |