PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim05g055500.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 363aa    MW: 40783 Da    PI: 7.1839
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim05g055500.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.0006152174123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C+ C+++Fs+   L  H  +H
  Sopim05g055500.0.1 152 YECKTCNRTFSSFQALGGHRASH 174
                         99**********99999998887 PP
2zf-C2H214.40.00011247269123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC++Cg  F++   L  H+r+H
  Sopim05g055500.0.1 247 HKCSYCGAEFTSGQALGGHMRRH 269
                         79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.4E-12151176IPR007087Zinc finger, C2H2
SuperFamilySSF576673.77E-8151174No hitNo description
SMARTSM003550.063152174IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.258152179IPR007087Zinc finger, C2H2
PROSITE patternPS000280154174IPR007087Zinc finger, C2H2
SuperFamilySSF576673.77E-8242269No hitNo description
Gene3DG3DSA:3.30.160.602.5E-4245271IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.005247269IPR015880Zinc finger, C2H2-like
PfamPF139125.4E-12247271IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.554247274IPR007087Zinc finger, C2H2
PROSITE patternPS000280249269IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MEAPQEEVMG GVSKGKRTKR VRPQSLITFM TINNAHSSLT GDTNVDGTVN GEEVNDDDNN  60
NNNDSSPPCT TSGKNFLDDD DVPTEEEEET AKCLILLSQG GHHHHHRRQT PPKKFFDLFN  120
DDMGLYQTKF NSKRYVETTD LGNGAKVGTY VYECKTCNRT FSSFQALGGH RASHKKPKPL  180
TIEPKKHPFF YFSDQDELSP PPATTTPTNY KYNNKLSPTL SPLSSQFNNI NMESSPNYNK  240
SQSPRIHKCS YCGAEFTSGQ ALGGHMRRHR GGANINNTIL CLSPLSIDQE YANYNLKKPR  300
NGLSLDLNLP APQDYQNQSR NLQHPPKYPQ EQAQKQQQEQ QQEQQQTTLV LSTTPQLIDC  360
HY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010321336.10.0zinc finger protein ZAT5-like
TrEMBLA0A3Q7GQL20.0A0A3Q7GQL2_SOLLC; Uncharacterized protein
STRINGSolyc05g055500.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40152343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.11e-46C2H2 family protein