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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim05g009840.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 436aa MW: 49020.1 Da PI: 4.6254 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 104.6 | 1.3e-32 | 56 | 195 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.. 79 lp+G++F+Ptd+e++ +L kveg + +++ +i++v+ i++++P++Lp vk++ ++fF+++ k+y+tg+rk+r+++ Sopim05g009840.0.1 56 LPRGVKFDPTDQEII-WHLIGKVEGGDrnshpfIDE--FIPTVNeddgICYTHPQNLP-GVKQDGCVTHFFHRAIKAYNTGTRKRRKIHgd 142 799************.78999999998676544222..3444422335**********.666777788******************85545 PP NAM 80 ...sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tg++k+v+ +g + g+kk++v+y + k+ekt+Wvmh+y+l Sopim05g009840.0.1 143 nsgDVRWHKTGRTKPVIL-DGIQRGCKKIMVLYisPSKGGKAEKTNWVMHQYHL 195 544778************.99************6534677788*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.71E-39 | 42 | 214 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.831 | 56 | 214 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.7E-14 | 57 | 195 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 436 aa Download sequence Send to blast |
MARPSWLVDS RRIATKIKSA SGDPATVNWK SNPTKACPNC QFIIDNNDVS HDWPGLPRGV 60 KFDPTDQEII WHLIGKVEGG DRNSHPFIDE FIPTVNEDDG ICYTHPQNLP GVKQDGCVTH 120 FFHRAIKAYN TGTRKRRKIH GDNSGDVRWH KTGRTKPVIL DGIQRGCKKI MVLYISPSKG 180 GKAEKTNWVM HQYHLGTGED EREGEYVVSK VFYQQQQVKQ GEKIEQEFPE DSECMVAKVD 240 PHTPKSVTPE PPRSDRLSSS MDARQQIAAA SPVNQYHEVE DYVEDDMGAL PEQPEDQDQN 300 IENQIDETGT KIETETGDDP KWWDSESQYL LDSQQLVEGL SLCDDLLASQ SPNRDGNEND 360 QVQKCRPSLA DYARLGPEDL KKDLEECQQF VADPANIEIG TPPDFRLSQL EFGSQDSYIA 420 WGGNKYGFDS AEQNG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975517 | 0.0 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004238966.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
Swissprot | Q6NQK2 | 1e-177 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A3Q7H781 | 0.0 | A0A3Q7H781_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g009840.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8162 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-180 | NAC family protein |