PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopim05g005440.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | NF-YB | ||||||||
Protein Properties | Length: 209aa MW: 23157.9 Da PI: 4.9481 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 126.4 | 1.1e-39 | 59 | 152 | 2 | 95 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 re+drf+Pi+nv+rim+k+lP n +is+ k ++qecvsefi+f+t+ea++ cq ++rkti+++dll al +G++dyve+l +yl++yre Sopim05g005440.0.1 59 REHDRFMPITNVIRIMRKILPPNVQISDGFKLMIQECVSEFIGFITGEANNCCQLDQRKTITAEDLLRALDRFGYDDYVETLALYLHRYRE 149 89***************************************************************************************** PP NF-YB 93 leg 95 +g Sopim05g005440.0.1 150 YDG 152 876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 4.8E-38 | 54 | 154 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.26E-30 | 62 | 152 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.3E-18 | 64 | 128 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 3.1E-10 | 92 | 110 | No hit | No description |
PRINTS | PR00615 | 3.1E-10 | 111 | 129 | No hit | No description |
PRINTS | PR00615 | 3.1E-10 | 130 | 148 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 209 aa Download sequence Send to blast |
MDDGNLVGSG DGGFHSYCRS PQRTSARSPS PDMEMSLELP AHLEQTIAAN VEHSERTIRE 60 HDRFMPITNV IRIMRKILPP NVQISDGFKL MIQECVSEFI GFITGEANNC CQLDQRKTIT 120 AEDLLRALDR FGYDDYVETL ALYLHRYREY DGGCGSTRRA RLLLRSSMVN PASGCNLTSY 180 QGDASNGSTS QGDAVDIEVQ SPAKETKE* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 5e-43 | 54 | 149 | 2 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000269|PubMed:12509518, ECO:0000269|PubMed:17322342}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC204082 | 0.0 | AC204082.1 Solanum lycopersicum cv. Heinz 1706, chromosome 5 BAC clone C05SLe0086I08, complete sequence. | |||
GenBank | HG975517 | 0.0 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027772814.1 | 1e-147 | nuclear transcription factor Y subunit B-1-like isoform X1 | ||||
Refseq | XP_027772815.1 | 1e-147 | nuclear transcription factor Y subunit B-1-like isoform X1 | ||||
Swissprot | Q84W66 | 8e-45 | NFYB6_ARATH; Nuclear transcription factor Y subunit B-6 | ||||
TrEMBL | A0A3Q7GBK9 | 1e-128 | A0A3Q7GBK9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g005440.1.1 | 1e-155 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA111 | 24 | 356 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G47670.1 | 4e-47 | nuclear factor Y, subunit B6 |