 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sopim02g082110.0.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
C3H |
| Protein Properties |
Length: 182aa MW: 20954.5 Da PI: 6.6976 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopim02g082110.0.1 | genome | CSHL | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 39.3 | 1.1e-12 | 43 | 68 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
y +C+++ +tG+C yGd+CkF+H+
Sopim02g082110.0.1 43 YQPDICKDYKETGYCGYGDSCKFMHD 68
67789********************8 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SuperFamily | SSF90229 | 7.72E-10 | 40 | 73 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.878 | 42 | 70 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.1E-7 | 42 | 69 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.0E-10 | 43 | 68 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 6.9E-13 | 43 | 73 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:3.30.40.10 | 4.8E-14 | 104 | 162 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| Pfam | PF13920 | 5.8E-9 | 120 | 162 | No hit | No description |
| SuperFamily | SSF57850 | 4.08E-14 | 120 | 163 | No hit | No description |
| SMART | SM00184 | 1.2E-4 | 121 | 158 | IPR001841 | Zinc finger, RING-type |
| CDD | cd00162 | 8.09E-7 | 121 | 162 | No hit | No description |
| PROSITE profile | PS50089 | 10.571 | 121 | 159 | IPR001841 | Zinc finger, RING-type |
| PROSITE pattern | PS00518 | 0 | 136 | 145 | IPR017907 | Zinc finger, RING-type, conserved site |
| Sequence ? help Back to Top |
| Protein Sequence Length: 182 aa
Download sequence Send
to blast |
MNQYTDYKAG LRREHTISSE KAGGAHGPLR ASAHIRVSAR FDYQPDICKD YKETGYCGYG 60
DSCKFMHDRG DYKSGWQMER EWDEAEKERK RKLALGMLNE DDEDAEKSDE DDDDDALPFA 120
CFICREPFVD PVMTKCKHYF CEHCALKHHA KNKKCYVCNQ PTLGIFNTAF EIRKRMAAQG 180
K*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5z56_M | 1e-54 | 27 | 176 | 181 | 317 | RING finger protein 113A |
| 5z58_M | 1e-54 | 27 | 176 | 181 | 317 | RING finger protein 113A |
| 6ff4_t | 1e-54 | 27 | 176 | 181 | 317 | RING finger protein 113A |
| 6ff7_t | 1e-54 | 27 | 176 | 181 | 317 | RING finger protein 113A |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC226510 | 0.0 | AC226510.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0172H10, complete sequence. |
| GenBank | HG975514 | 0.0 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
