PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopim01g108950.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 348aa MW: 40702.2 Da PI: 4.6951 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.7 | 4.4e-13 | 5 | 90 | 1 | 93 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 ffk++ + ++ +r+ +p ++ ++ +gk ++++ l++ s+ sW v++ k + ++ +GW++F ++n+L+ g +++F +dg++ f Sopim01g108950.0.1 5 FFKAF--NPQTSAKRMKIPTAYT-NYkNGK--LPRKVFLRNqFSNMSWPVRV--IKIEKDLYFLNGWEKFIEDNNLEFGNIIIFDYDGNEIF- 89 78888..56666678*******9.663555..7889*****6677*******..67777767777**********************98877. PP .E CS B3 92 lv 93 Sopim01g108950.0.1 90 -D 90 .4 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.4E-16 | 3 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.929 | 3 | 97 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.39E-17 | 5 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.67E-10 | 5 | 87 | No hit | No description |
Pfam | PF02362 | 1.1E-10 | 5 | 89 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.4E-11 | 5 | 97 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.2E-15 | 236 | 330 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.24E-17 | 236 | 331 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.529 | 240 | 339 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.74E-7 | 241 | 333 | No hit | No description |
SMART | SM01019 | 0.0033 | 243 | 334 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.1E-7 | 251 | 326 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 348 aa Download sequence Send to blast |
MEKGFFKAFN PQTSAKRMKI PTAYTNYKNG KLPRKVFLRN QFSNMSWPVR VIKIEKDLYF 60 LNGWEKFIED NNLEFGNIII FDYDGNEIFD IKLLEPNGCI KNGAKCDNKK EEVNVEHQQS 120 IEPKEKNKTR DNNNSSFDDD STDNYMVEEE DNDEEEVENE EEEDNEQKGE EKETEEEVDE 180 GEEDETEEEV VERKENETDG EDTSASKAGR RKAITCKVRN VHDKYGADIF RSGRATQPKN 240 PYFVAKMRAK MRNQLYVPID VVRDYKLELP PTMIIRDSVG REFETKVNKW SNGTTWLVGG 300 WRNLCRWNLV EKDDRCICEF VRGKCGRVLY LQIQVLYEGS NSHRNNK* |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC238499 | 0.0 | AC238499.2 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-8l19 map 1, complete sequence. | |||
GenBank | HG975513 | 0.0 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025884759.1 | 0.0 | B3 domain-containing protein Os12g0591400-like | ||||
TrEMBL | A0A3Q7EY67 | 1e-137 | A0A3Q7EY67_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g108950.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1091 | 22 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G66980.1 | 4e-14 | B3 family protein |