PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim01g096790.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | B3 | ||||||||
Protein Properties | Length: 93aa MW: 10563 Da PI: 5.1422 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.2 | 1.1e-11 | 6 | 68 | 37 | 99 |
EEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 37 tledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++d+ g++W+v + +k+ ++ ++++kGW++F k + Lk g f++F +d++++ +++vkvf++ Sopim01g096790.0.1 6 KIKDLCGNVWDVCI--EKSEDGvvTFIGKGWEDFIKYQSLKNGYFLIFIYDDERDSSFTVKVFST 68 678999********..8888888899*************************8877778****987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.674 | 1 | 69 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.3E-10 | 6 | 70 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.1E-9 | 6 | 68 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.37E-10 | 6 | 67 | No hit | No description |
SuperFamily | SSF101936 | 1.8E-11 | 7 | 74 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 93 aa Download sequence Send to blast |
MKERSKIKDL CGNVWDVCIE KSEDGVVTFI GKGWEDFIKY QSLKNGYFLI FIYDDERDSS 60 FTVKVFSTNG SKKSVPMTIQ NTKGEDHVIV VE* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975513 | 1e-155 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010327438.1 | 1e-61 | B3 domain-containing protein REM20 | ||||
Refseq | XP_025888057.1 | 1e-61 | B3 domain-containing protein REM20 | ||||
TrEMBL | A0A3Q7EM71 | 3e-60 | A0A3Q7EM71_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g096790.2.1 | 8e-61 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA16006 | 6 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66980.1 | 1e-09 | B3 family protein |