PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g096790.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 93aa    MW: 10563 Da    PI: 5.1422
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g096790.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.21.1e-116683799
                        EEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3 37 tledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                        +++d+ g++W+v +  +k+ ++  ++++kGW++F k + Lk g f++F +d++++ +++vkvf++
  Sopim01g096790.0.1  6 KIKDLCGNVWDVCI--EKSEDGvvTFIGKGWEDFIKYQSLKNGYFLIFIYDDERDSSFTVKVFST 68
                        678999********..8888888899*************************8877778****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.674169IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-10670IPR015300DNA-binding pseudobarrel domain
PfamPF023622.1E-9668IPR003340B3 DNA binding domain
CDDcd100173.37E-10667No hitNo description
SuperFamilySSF1019361.8E-11774IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MKERSKIKDL CGNVWDVCIE KSEDGVVTFI GKGWEDFIKY QSLKNGYFLI FIYDDERDSS  60
FTVKVFSTNG SKKSVPMTIQ NTKGEDHVIV VE*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755131e-155HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010327438.11e-61B3 domain-containing protein REM20
RefseqXP_025888057.11e-61B3 domain-containing protein REM20
TrEMBLA0A3Q7EM713e-60A0A3Q7EM71_SOLLC; Uncharacterized protein
STRINGSolyc01g096790.2.18e-61(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1600666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-09B3 family protein