PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen12g032990.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB_related

Protein Properties

Length: 1215aa MW: 135634 Da PI: 8.0345

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen12g032990.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.6	6e-08	48	83	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 +W+ e+ +++a +++G++ Wk++a + +Rt++++ Sopen12g032990.1 48 KWSDEDLTHFYQAYRKYGKD-WKKVAGAVK-TRTAEMV 83 8***************99.****9.*9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0065	45	93	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.27E-9	45	92	IPR009057	Homeodomain-like
Pfam	PF00249	8.8E-7	48	83	IPR001005	SANT/Myb domain
CDD	cd00167	2.32E-4	48	83	No hit	No description
SMART	SM01135	2.2E-58	711	812	IPR033471	DIRP domain
Pfam	PF06584	9.6E-33	711	811	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1215 aa Download sequence Send to blast
MAPAKKSRTA NKRFSPTTEI SPSKDGIGDN SKKSLQRKRK LSDMLGPKWS DEDLTHFYQA 60 YRKYGKDWKK VAGAVKTRTA EMVEALYTMN RAYLSLPEGT ASVVGLIAMM TDHYCNLAAS 120 DSEQESNEDA GTSRKPQKRA RKTQPNVSKT SEVASPTLAA THGCLTLLKK KRSGGSRPRA 180 VGKRTPRFPV SFSHENPMGE KYFSPSRQSL KLQADDSDTD EDVKIALVLT EASQRGGSPQ 240 VSQTPNRWTD SAMSSPAETA GRKRVKMGMG DGKLLSNEVD EEEGSMEADT GELLGYKKDL 300 TETGSISRTA QKGRRPYGEK LDVDSVDNHF EEACSGTEEG QRLGSVGGKL ELEASDEKNS 360 XGSMEADTGE LLGYKKDLTE TVSISRTAQK GRRPYGEKLD VDSVDNHFDD IKEACSGTEE 420 GQRLGSVGGK LELEASDEKN LRTSLQGPRK RSRKMFFRRD EDSPFDALQT LADLSLMMPT 480 ENEDESIPAK DDTDDHVDES GSVEALPANK QRDKHGSAGV KSRWSQPVSK SGVASSKTLK 540 HGKVRPTDVS AVPETKQVRR AQKAMSSKAR KNEGHINNEV TDSLEAEAKE LPNKSTNKGK 600 RSNQSMSPKL IKDQELASCI DPRTERSDSA QSTAQIPVEN QVNLPAKVRS RRKTDLKNPQ 660 RQRKSKISDK ILDDTSASVT AFHDRAFSLK EKISNRLSKH QVRSWCIYEW FYSAIDYPWF 720 AKREFVEYLH HVGLGHVPRL TRVEWGVIRS SLGKPRRFSE QFLNEEKEKL YQYRESVRTH 780 YNELREGTRE GLPTDLAKPL SVGQRVIAIH PKTREIHDGS VLTVDRSRCR VQFDRPELGV 840 EFVMDFECMP RNPFENMPSS LKRHADGVDK FFESFNELKV NARAHEFMKF PVGDNMENGD 900 VFSHFSPPSH PISNLLMQNK VASAEADMQC KSGVMETAAY QQTTYSKLSV AAQILAKEAD 960 VQALVEFNRA LDKKDAVVSE LRRMNDEVLE NEKSNDSSLR DSEPFKKQYA AVLIQLNEVN 1020 QQVSSALYRL RQRNNHPGNM LLALPRPVTN FIDPSVLSTF DCCTSQPDES GVLVNEIIES 1080 SKIKARTMVD AAVQAMISFS CRENATEKIE VVDYVNDRIP LDDSFMPTPP DPKSKNMSDT 1140 NEAEIPSELI SKCIATLLMI QKCTERQFPP ADVAKVLDSA VASLQPSCSQ NAPIYREIQK 1200 CMGIIRNQIL SLVPT

Sequence ? help Back to Top

Protein Sequence Length: 1215 aa Download sequence Send to blast

MAPAKKSRTA NKRFSPTTEI SPSKDGIGDN SKKSLQRKRK LSDMLGPKWS DEDLTHFYQA  60
YRKYGKDWKK VAGAVKTRTA EMVEALYTMN RAYLSLPEGT ASVVGLIAMM TDHYCNLAAS  120
DSEQESNEDA GTSRKPQKRA RKTQPNVSKT SEVASPTLAA THGCLTLLKK KRSGGSRPRA  180
VGKRTPRFPV SFSHENPMGE KYFSPSRQSL KLQADDSDTD EDVKIALVLT EASQRGGSPQ  240
VSQTPNRWTD SAMSSPAETA GRKRVKMGMG DGKLLSNEVD EEEGSMEADT GELLGYKKDL  300
TETGSISRTA QKGRRPYGEK LDVDSVDNHF EEACSGTEEG QRLGSVGGKL ELEASDEKNS  360
XGSMEADTGE LLGYKKDLTE TVSISRTAQK GRRPYGEKLD VDSVDNHFDD IKEACSGTEE  420
GQRLGSVGGK LELEASDEKN LRTSLQGPRK RSRKMFFRRD EDSPFDALQT LADLSLMMPT  480
ENEDESIPAK DDTDDHVDES GSVEALPANK QRDKHGSAGV KSRWSQPVSK SGVASSKTLK  540
HGKVRPTDVS AVPETKQVRR AQKAMSSKAR KNEGHINNEV TDSLEAEAKE LPNKSTNKGK  600
RSNQSMSPKL IKDQELASCI DPRTERSDSA QSTAQIPVEN QVNLPAKVRS RRKTDLKNPQ  660
RQRKSKISDK ILDDTSASVT AFHDRAFSLK EKISNRLSKH QVRSWCIYEW FYSAIDYPWF  720
AKREFVEYLH HVGLGHVPRL TRVEWGVIRS SLGKPRRFSE QFLNEEKEKL YQYRESVRTH  780
YNELREGTRE GLPTDLAKPL SVGQRVIAIH PKTREIHDGS VLTVDRSRCR VQFDRPELGV  840
EFVMDFECMP RNPFENMPSS LKRHADGVDK FFESFNELKV NARAHEFMKF PVGDNMENGD  900
VFSHFSPPSH PISNLLMQNK VASAEADMQC KSGVMETAAY QQTTYSKLSV AAQILAKEAD  960
VQALVEFNRA LDKKDAVVSE LRRMNDEVLE NEKSNDSSLR DSEPFKKQYA AVLIQLNEVN  1020
QQVSSALYRL RQRNNHPGNM LLALPRPVTN FIDPSVLSTF DCCTSQPDES GVLVNEIIES  1080
SKIKARTMVD AAVQAMISFS CRENATEKIE VVDYVNDRIP LDDSFMPTPP DPKSKNMSDT  1140
NEAEIPSELI SKCIATLLMI QKCTERQFPP ADVAKVLDSA VASLQPSCSQ NAPIYREIQK  1200
CMGIIRNQIL SLVPT

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975451	0.0	HG975451.1 Solanum pennellii chromosome ch12, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027769414.1	0.0	protein ALWAYS EARLY 3-like isoform X3
TrEMBL	A0A3Q7JYP7	0.0	A0A3Q7JYP7_SOLLC; Uncharacterized protein
STRING	Solyc12g098160.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3312	23	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding