PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen12g028110.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Trihelix

Protein Properties

Length: 346aa MW: 39110.6 Da PI: 6.3269

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen12g028110.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	81.9	8.6e-26	40	121	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e+++Li +rre+++ ++++k++k+lW+++s kmre+gf rsp++C++kw+nl k++kk k+++ ++ s +++y+++++ Sopen12g028110.1 40 WVQEETRVLIGLRREIDSLFNTSKSNKHLWDQISMKMREKGFDRSPTMCTDKWRNLLKEFKKAKQNQDRN---GSAKMSYYKEID 121 ***************************************************************99984...566899*997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.3E-4	30	101	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.56	32	96	IPR017877	Myb-like domain
SMART	SM00717	0.0024	36	98	IPR001005	SANT/Myb domain
CDD	cd12203	4.64E-27	38	103	No hit	No description
Pfam	PF13837	9.5E-21	39	123	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MGGGGGGGGG GGDTTSSGGE ENCTNPCSDV KTPKKRAETW VQEETRVLIG LRREIDSLFN 60 TSKSNKHLWD QISMKMREKG FDRSPTMCTD KWRNLLKEFK KAKQNQDRNG SAKMSYYKEI 120 DEILRDRTNT PLPPPPKVDS FMHFAQKGLD DTSITFGPVE ENGRPTLNLE RRLDHDGHPL 180 AITAADAVTA SGVSPWNWRE PHGTGEPSQS YEGRVISVKW GDYTKRIGID GTADAIKEAI 240 KSAFRLRTKR AFWLEDEDNI VRTLDRDMPL GNYTLHVDEG LTIKICMYDE ADHLPVHTED 300 KTFYSEDDFR NFLSRRGWSC LREYNGYRNV DSMDELCPGA VYRGVN

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MGGGGGGGGG GGDTTSSGGE ENCTNPCSDV KTPKKRAETW VQEETRVLIG LRREIDSLFN  60
TSKSNKHLWD QISMKMREKG FDRSPTMCTD KWRNLLKEFK KAKQNQDRNG SAKMSYYKEI  120
DEILRDRTNT PLPPPPKVDS FMHFAQKGLD DTSITFGPVE ENGRPTLNLE RRLDHDGHPL  180
AITAADAVTA SGVSPWNWRE PHGTGEPSQS YEGRVISVKW GDYTKRIGID GTADAIKEAI  240
KSAFRLRTKR AFWLEDEDNI VRTLDRDMPL GNYTLHVDEG LTIKICMYDE ADHLPVHTED  300
KTFYSEDDFR NFLSRRGWSC LREYNGYRNV DSMDELCPGA VYRGVN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	3e-43	34	119	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00640	PBM	Transfer from MDP0000164819	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975451	0.0	HG975451.1 Solanum pennellii chromosome ch12, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015061895.1	0.0	trihelix transcription factor GT-1-like isoform X2
Swissprot	Q9FX53	1e-165	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A2G2WYF4	0.0	A0A2G2WYF4_CAPBA; Uncharacterized protein
TrEMBL	A0A2G3CMH9	0.0	A0A2G3CMH9_CAPCH; Trihelix transcription factor GT-1
STRING	XP_009784713.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5113	21	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-168	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]