PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g024040.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 263aa    MW: 30125.6 Da    PI: 6.7353
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g024040.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.7e-0598117120
                       EEETTTTEEESSHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                       ++Cp C k+F+r  n++ H+
  Sopen11g024040.1  98 FSCPLCFKTFNRYNNMQMHM 117
                       89*****************9 PP
2zf-C2H215.16.9e-05182204123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       + C +Cgk F  + + ++H +++
  Sopen11g024040.1 182 FMCRKCGKAFAVRGDWRTHEKNC 204
                       89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.31E-594120No hitNo description
PROSITE profilePS501579.6698125IPR007087Zinc finger, C2H2
SMARTSM003550.6198120IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.0E-598117IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280100120IPR007087Zinc finger, C2H2
SuperFamilySSF576671.06E-6164202No hitNo description
Gene3DG3DSA:3.30.160.606.8E-6178202IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549182202IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808182202IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MEVDHNNSKE NKDQESFISN NFGDQESVSV ALQLGLPNPS PHDDVISRIN PSTNKEEVQE  60
EQEEEEVTLA NIGYSSTLHK GQYWIPTPAQ ILIGPTQFSC PLCFKTFNRY NNMQMHMWGH  120
GSQYRKGPES LRGTQPTAML RLPCFCCSPG CRNNIDHPRA KPLKDFRTLQ THYKRKHGIK  180
PFMCRKCGKA FAVRGDWRTH EKNCGKLWYC TCGSDFKHKR SLKDHIKAFG NGHEAYGIDC  240
LEEEDEPASE IEQDNDHDHD PSN
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015057929.10.0zinc finger protein WIP2
SwissprotQ9SVY11e-130ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A3Q7IXN90.0A0A3Q7IXN9_SOLLC; Uncharacterized protein
STRINGSolyc11g062060.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-130C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]