PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopen10g002790.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 355aa MW: 40210 Da PI: 9.3221 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.3 | 2.9e-53 | 16 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeelvv+yLkk+v+g+++++ ++i e+d+yk++Pw+Lp+k+ +e+ew+fFs+rd+ky++g r+nra++sgyWkatg+dk+v+ Sopen10g002790.2 16 LPPGFRFHPTDEELVVHYLKKRVAGTPIPV-DIIGEIDLYKFDPWELPAKAIFGEQEWFFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVF 107 79****************************.99***************7777899************************************** PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ ++++vg+kk Lvfy g+ pkg+kt+W+mheyr+ Sopen10g002790.2 108 TSgGTQKVGVKKALVFYGGKPPKGVKTNWIMHEYRV 143 9977788***************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-64 | 11 | 179 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.421 | 16 | 179 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.6E-28 | 17 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 355 aa Download sequence Send to blast |
MESTDSSTGT RHQPQLPPGF RFHPTDEELV VHYLKKRVAG TPIPVDIIGE IDLYKFDPWE 60 LPAKAIFGEQ EWFFFSPRDR KYPNGARPNR AATSGYWKAT GTDKPVFTSG GTQKVGVKKA 120 LVFYGGKPPK GVKTNWIMHE YRVVENKTNN KPLGCDNIVA NKKGSLRLDD WVLCRIYKKN 180 NTQRSIDDLH DMLGSIPQNV PNSILQGIKP SNYGTILLEN ESNMYDGIMN NTNDMINNNN 240 RSIPQISSKR SMHGGLYWNN DEATTTTTTT DRNHSPNTKR FLVENNGDDG LNMNNIARIT 300 NHEQSSSMAN FLSHFPQNPS IQQQQQQQQQ VLGSLNDGVV FRQPYNQVTG MNWYS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-75 | 13 | 182 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-75 | 13 | 182 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-75 | 13 | 182 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-75 | 13 | 182 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-75 | 1 | 182 | 9 | 171 | NAC domain-containing protein 19 |
3swm_B | 2e-75 | 1 | 182 | 9 | 171 | NAC domain-containing protein 19 |
3swm_C | 2e-75 | 1 | 182 | 9 | 171 | NAC domain-containing protein 19 |
3swm_D | 2e-75 | 1 | 182 | 9 | 171 | NAC domain-containing protein 19 |
3swp_A | 2e-75 | 1 | 182 | 9 | 171 | NAC domain-containing protein 19 |
3swp_B | 2e-75 | 1 | 182 | 9 | 171 | NAC domain-containing protein 19 |
3swp_C | 2e-75 | 1 | 182 | 9 | 171 | NAC domain-containing protein 19 |
3swp_D | 2e-75 | 1 | 182 | 9 | 171 | NAC domain-containing protein 19 |
4dul_A | 2e-75 | 13 | 182 | 14 | 168 | NAC domain-containing protein 19 |
4dul_B | 2e-75 | 13 | 182 | 14 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY573802 | 0.0 | AY573802.1 Lycopersicon esculentum NAC domain protein (NAC-NOR) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015089632.1 | 0.0 | NAC transcription factor 56 | ||||
Swissprot | Q9LD44 | 1e-105 | NAC56_ARATH; NAC transcription factor 56 | ||||
TrEMBL | Q56UP7 | 0.0 | Q56UP7_SOLLC; NAC domain protein | ||||
STRING | Solyc10g006880.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1814 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G15510.1 | 1e-104 | NAC domain containing protein 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|