PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen07g034510.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NAC

Protein Properties

Length: 338aa MW: 38295 Da PI: 7.8308

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen07g034510.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	165.6	1.8e-51	14	143	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhP+deel+++yL kkv++++ + + evd++k+ePw++p+ + + kewyf+s+rd+kyatg r+nrat sgyWkatgkd++ Sopen07g034510.1 14 LPPGFRFHPRDEELICDYLMKKVDQQSeyQQQYPLLIEVDLNKSEPWEIPEVACVGGKEWYFYSQRDRKYATGLRTNRATVSGYWKATGKDRA 106 79*********************996433334599*********7666789******************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +++ kg+lvg++ktLvfy+grapkg+k+dWvmhe+rle Sopen07g034510.1 107 IIR-KGSLVGMRKTLVFYQGRAPKGRKSDWVMHEFRLE 143 9.999****************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.68E-61	4	165	IPR003441	NAC domain
PROSITE profile	PS51005	56.308	14	165	IPR003441	NAC domain
Pfam	PF02365	2.9E-26	15	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MSNNNSLSMV ESKLPPGFRF HPRDEELICD YLMKKVDQQS EYQQQYPLLI EVDLNKSEPW 60 EIPEVACVGG KEWYFYSQRD RKYATGLRTN RATVSGYWKA TGKDRAIIRK GSLVGMRKTL 120 VFYQGRAPKG RKSDWVMHEF RLEPPIRPQI SSLKEDWVLC RVFHKKKELL GTKQEIGSNN 180 LYYDNDTISC SSLPPLMDPY ITFDQTNPNN NNMNELYYEQ VPCFSIFTPN QTFTSHSHHL 240 PSATTAIGST AYGGFPADIG NYLNATATSS TCDNKVIKAV LSHLSTKNNI IMEGNSNNNN 300 IINPAQNIKG GNSPSFGEGS SETSFLSEVG YPTMWNNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-52	1	166	4	166	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-52	1	166	4	166	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-52	1	166	4	166	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-52	1	166	4	166	NO APICAL MERISTEM PROTEIN
4dul_A	9e-52	1	166	4	166	NAC domain-containing protein 19
4dul_B	9e-52	1	166	4	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269\|PubMed:11114891}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975446	0.0	HG975446.1 Solanum pennellii chromosome ch07, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015081044.1	0.0	NAC domain-containing protein 21/22
Swissprot	Q84TE6	1e-108	NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBL	A0A3Q7ID26	0.0	A0A3Q7ID26_SOLLC; Uncharacterized protein
STRING	Solyc07g066330.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA134	24	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56010.2	1e-108	NAC domain containing protein 1

Publications ? help Back to Top
Le Hénanff G, et al. Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance. J. Exp. Bot., 2013. 64(16): p. 4877-93 [PMID:24043850] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Huo X,Wang C,Teng Y,Liu X Identification of miRNAs associated with dark-induced senescence in Arabidopsis. BMC Plant Biol., 2015. 15: p. 266 [PMID:26530097] Chen X, et al. Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis. Plant Physiol., 2016. 170(4): p. 2136-45 [PMID:26850273] Liu C,Wang B,Li Z,Peng Z,Zhang J TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]