PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen06g016040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 304aa MW: 33777.8 Da PI: 4.6304 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.8 | 3.6e-20 | 83 | 133 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr++ +g+WvAeIr+p+ r r +lg+fgta eAa a+++a+++++g Sopen06g016040.1 83 CKYRGVRQRI-WGKWVAEIREPK----RgSRLWLGTFGTAIEAALAYDEAARAMYG 133 79*****998.**********83....46************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.4E-14 | 83 | 133 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.77E-31 | 83 | 142 | No hit | No description |
PROSITE profile | PS51032 | 20.956 | 84 | 141 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.8E-36 | 84 | 147 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-20 | 84 | 141 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.1E-30 | 84 | 142 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-9 | 85 | 96 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-9 | 107 | 123 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MAIMDEGANM VSLPLDYSGK RKSRSRRDRT KNVEETLAKW KEYNEKLDSV DNEGKGKPVR 60 KVAAKGSKKG CMRGKGGPEN WRCKYRGVRQ RIWGKWVAEI REPKRGSRLW LGTFGTAIEA 120 ALAYDEAARA MYGPCARLNL PNYASSKECD SVSWATTSAS DCTVASGFGE VCPADGALHE 180 ADTPLSSVKD ERTAMDIVEP TSIDEDTLKS GWDCLDKLNM DEMFDVDELL AMLESTPVFT 240 KDYNSDGKHN NMVSDSQCQE QNAVVDPMTA VDYGFDFLKP GRQEDLNFSS DDLAFIDLDS 300 ELVV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 7e-17 | 85 | 141 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 20 | 27 | RKSRSRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00302 | DAP | Transfer from AT2G40340 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015078730.1 | 0.0 | dehydration-responsive element-binding protein 2A-like | ||||
TrEMBL | Q8GZF2 | 0.0 | Q8GZF2_SOLLC; Dehydration responsive element binding protein | ||||
STRING | Solyc06g050520.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3701 | 24 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40340.1 | 3e-46 | ERF family protein |