PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen06g003060.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | G2-like | ||||||||
Protein Properties | Length: 466aa MW: 50796.4 Da PI: 4.7438 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 108.1 | 4.6e-34 | 253 | 307 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe+Fveav++LGGse+AtPk +l+lmkv+gLt++hvkSHLQkYR+ Sopen06g003060.2 253 KQRMRWTPELHEAFVEAVNKLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRT 307 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.436 | 250 | 310 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.55E-18 | 251 | 307 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-31 | 251 | 309 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.6E-25 | 253 | 307 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.8E-10 | 255 | 306 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 4.0E-24 | 338 | 385 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 466 aa Download sequence Send to blast |
MEARPALSVQ RTGAHELSNF GASGAHSSLP VLQTSLEEKY PKLPGAALSS FPSNSGAVSH 60 LFSSPSEFST NLDFSSVLPY DEHLAPATFI SQPTINEASI PLANSGVLQG AASSQYVNVN 120 SESWCTELLP DYLDYSVNAP VQNTQLDCRN SGDCQIPPED PSKQSDWPEW ADLVMSDDDA 180 LTSSWMVDTS IADAEPKMQY QEQNQPSNFP VHQVQPFQQI PTASVETSAV IPASVETSAV 240 VPASSTGSGS SSKQRMRWTP ELHEAFVEAV NKLGGSERAT PKGVLKLMKV EGLTIYHVKS 300 HLQKYRTARY KPEASEGSSE KKESSIGDLS ALDLKTGIEI TEALRLQMEV QKQLHEQLEI 360 QRNLQLRIEE QGRCLQMMFE KQCKSMPGID LAKGSSSMAE AASAQLNDAV QSSSNKNDPG 420 ASLVDHHEAG SHTTQEVVRE KQKEHEREDI TSSSNLPPTK RAKVDE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-32 | 253 | 311 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-32 | 253 | 311 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-32 | 253 | 311 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-32 | 253 | 311 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-32 | 253 | 311 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-32 | 253 | 311 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-32 | 253 | 311 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-32 | 253 | 311 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015078236.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 1-like isoform X1 | ||||
TrEMBL | A0A3Q7GPJ7 | 0.0 | A0A3Q7GPJ7_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g008200.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2753 | 23 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28610.1 | 1e-78 | phosphate starvation response 1 |