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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen05g033950.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C2H2 | ||||||||
Protein Properties | Length: 360aa MW: 40447.6 Da PI: 7.2404 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.1 | 0.0006 | 152 | 174 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++Fs+ L H +H Sopen05g033950.1 152 YECKTCNRTFSSFQALGGHRASH 174 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 14.3 | 0.00012 | 246 | 268 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H Sopen05g033950.1 246 HTCSYCGAEFTSGQALGGHMRRH 268 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.81E-8 | 151 | 174 | No hit | No description |
Pfam | PF13912 | 1.4E-12 | 151 | 176 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.063 | 152 | 174 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.258 | 152 | 179 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 154 | 174 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.81E-8 | 241 | 268 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.0E-4 | 244 | 270 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0079 | 246 | 268 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.367 | 246 | 273 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.6E-11 | 246 | 270 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 248 | 268 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MEAPQEEVMG GVSKGKRTKR VRPQSLITFM TINNAHSSST GDTNVDGTVN GEEVNDNDNN 60 NNDSSPPCTT SGKNFLDDDV PTEEEEETAK CLILLSQGGH HHHHHHRRQT PPKKFLDLFN 120 DDMGLYQTKF NSKRYVETTD LGNGAKAGTY VYECKTCNRT FSSFQALGGH RASHKKPKPL 180 TIEPKKHPFF YFSDQDEPSP PPATTPPNYK YNNKLSPTLS PLSSQFNNIN MESAPNYNKS 240 QSPRIHTCSY CGAEFTSGQA LGGHMRRHRG GANINNTILC LSPLSIDQEY ANYNLKKPRN 300 GLSLDLNLPA PQDYQNQSRN LQHPPKYPQE QAQKQQQQEE EQQQTTLVLS TTPQLIDCHY |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00487 | DAP | Transfer from AT5G04390 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 0.0 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015075787.1 | 0.0 | zinc finger protein ZAT5-like | ||||
TrEMBL | A0A3Q7GQL2 | 0.0 | A0A3Q7GQL2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g055500.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4015 | 23 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04390.1 | 7e-48 | C2H2 family protein |