PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g028660.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 153aa    MW: 17399.4 Da    PI: 9.8312
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g028660.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_172.18.2e-231072163
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1  1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                      e+elkre+rkq+NRe+ArrsR+RK+ae eeL+ +v++L++eN aL++e+++ ++++++lk e+
  Sopen05g028660.2 10 ERELKREKRKQSNRESARRSRLRKQAEAEELAVRVQSLTSENLALRSEINKFTENCEQLKFEN 72
                      89*********************************************************9775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.1E-18571No hitNo description
SMARTSM003383.6E-191074IPR004827Basic-leucine zipper domain
PfamPF001703.7E-211072IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.5071275IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.66E-111369No hitNo description
CDDcd147021.73E-131565No hitNo description
PROSITE patternPS0003601732IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MPGEVWLQNE RELKREKRKQ SNRESARRSR LRKQAEAEEL AVRVQSLTSE NLALRSEINK  60
FTENCEQLKF ENVALMERLK NQQGQAKEVT LGMIDDKRLK PVSTADLLAR VNNNNGSFSR  120
TNEDGEVHDS TSGAKLHQLL DASSRTDHAV AAR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12632RRSRLRK
22633RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754441e-128HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010321523.11e-102transcriptional activator TAF-1-like isoform X1
RefseqXP_019069354.11e-102transcriptional activator TAF-1-like isoform X2
SwissprotQ990891e-46CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLA0A3Q7HEK51e-100A0A3Q7HEK5_SOLLC; Uncharacterized protein
STRINGSolyc05g050220.2.11e-101(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.16e-38G-box binding factor 3
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Feldbrügge M,Hahlbrock K,Weisshaar B
    The transcriptional regulator CPRF1: expression analysis and gene structure.
    Mol. Gen. Genet., 1996. 251(6): p. 619-27
    [PMID:8757392]