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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen05g028660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bZIP | ||||||||
Protein Properties | Length: 171aa MW: 19227.6 Da PI: 10.0991 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 71.9 | 9.4e-23 | 28 | 90 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkre+rkq+NRe+ArrsR+RK+ae eeL+ +v++L++eN aL++e+++ ++++++lk e+ Sopen05g028660.1 28 ERELKREKRKQSNRESARRSRLRKQAEAEELAVRVQSLTSENLALRSEINKFTENCEQLKFEN 90 89*********************************************************9775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 3.7E-18 | 23 | 89 | No hit | No description |
Pfam | PF00170 | 4.4E-21 | 28 | 90 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 3.6E-19 | 28 | 92 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 12.507 | 30 | 93 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.7E-11 | 31 | 87 | No hit | No description |
CDD | cd14702 | 1.56E-14 | 33 | 83 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 35 | 50 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MTTTPLVKSS PTSQISPAMP GEVWLQNERE LKREKRKQSN RESARRSRLR KQAEAEELAV 60 RVQSLTSENL ALRSEINKFT ENCEQLKFEN VALMERLKNQ QGQAKEVTLG MIDDKRLKPV 120 STADLLARVN NNNGSFSRTN EDGEVHDSTS GAKLHQLLDA SSRTDHAVAA R |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 44 | 50 | RRSRLRK |
2 | 44 | 51 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 1e-128 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010321523.1 | 1e-115 | transcriptional activator TAF-1-like isoform X1 | ||||
Refseq | XP_019069354.1 | 1e-115 | transcriptional activator TAF-1-like isoform X2 | ||||
Swissprot | Q99089 | 3e-47 | CPRF1_PETCR; Common plant regulatory factor 1 | ||||
TrEMBL | A0A3Q7HEK5 | 1e-113 | A0A3Q7HEK5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g050220.2.1 | 1e-114 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3113 | 24 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46270.1 | 6e-38 | G-box binding factor 3 |
Publications ? help Back to Top | |||
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