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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen03g013660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C2H2 | ||||||||
Protein Properties | Length: 326aa MW: 37174.7 Da PI: 6.8938 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.3 | 2.8e-05 | 156 | 175 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ Sopen03g013660.1 156 FSCPVCFKTFNRYNNMQMHM 175 89*****************9 PP | |||||||
2 | zf-C2H2 | 14.7 | 9.1e-05 | 240 | 262 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ Sopen03g013660.1 240 FMCRKCGKAFAVRGDWRTHEKNC 262 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 9.21E-5 | 152 | 178 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.6E-6 | 156 | 175 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.38 | 156 | 178 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.64 | 156 | 183 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 158 | 178 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.55E-6 | 222 | 260 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.8E-6 | 236 | 260 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 8.808 | 240 | 260 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 49 | 240 | 260 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MKKVSTMTDP NFYSQEEEWL KLNNPNIPSP PPNNNNYYYE TPPLKEALPL LSLLSPIKHD 60 DDDDDDEGCC SISDLDKKGR RVDHMDDNSC TKDDDEDVTV ALHIGLPNPS SADLASTNKD 120 DVSIPMANMI NTTSATSTRQ YWIPTPSQIL IGPTQFSCPV CFKTFNRYNN MQMHMWGHGS 180 QYRKGPESLR GTQPTGMLRL PCYCCTPGCR NNIDHPRAKP LKDFRTLQTH YKRKHGIKPF 240 MCRKCGKAFA VRGDWRTHEK NCGKLWYCIC GSDFKHKRSL KDHIKAFGQG HGPYGIHSFD 300 DDDDDPASEV EQDNPPQHID IDHTRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015068423.2 | 0.0 | zinc finger protein WIP2 | ||||
Swissprot | Q9SVY1 | 1e-125 | ZWIP2_ARATH; Zinc finger protein WIP2 | ||||
TrEMBL | A0A3Q7FKS7 | 0.0 | A0A3Q7FKS7_SOLLC; Uncharacterized protein | ||||
STRING | PGSC0003DMT400077822 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA462 | 24 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57670.1 | 1e-124 | C2H2 family protein |
Publications ? help Back to Top | |||
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