PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopen02g030280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 351aa MW: 37822.5 Da PI: 5.4646 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 78.3 | 9.3e-25 | 253 | 315 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+++v++L+ eN++Lk+el++l++e++kl+se+ Sopen02g030280.1 253 ERELKRQKRKQSNRESARRSRLRKQAECEELQRRVEALSHENHSLKDELQRLSEECEKLTSEN 315 89***********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 9.8E-30 | 1 | 92 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Gene3D | G3DSA:1.20.5.170 | 2.3E-21 | 247 | 312 | No hit | No description |
SMART | SM00338 | 6.1E-23 | 253 | 317 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.7E-22 | 253 | 315 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.369 | 255 | 318 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.56E-12 | 256 | 312 | No hit | No description |
CDD | cd14702 | 5.95E-24 | 258 | 308 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 260 | 275 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0010629 | Biological Process | negative regulation of gene expression | ||||
GO:0090342 | Biological Process | regulation of cell aging | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 351 aa Download sequence Send to blast |
MGAGEESTPT KTSKPPLTQE TPTAPSYPDW SSSMQAYYSA GATPPFFASP VASPAPHPYM 60 WGGQHPLMPP YGTPVPYPAL YPPAGVYAHP NIATPAPNSV PANPEADGKG PEGKDRNSSK 120 KLKVCSGGKA GDNGKVTSGS GNDGATQSDE SRSEGTSDTN DENDNNEFAA NKKGSFDQML 180 ADGASAQNNP AKENHPTSIH GNPVTMPATN LNIGMDVWNA SAAGPGAIKI QQNATGPVIG 240 HEGRMNDQWI QEERELKRQK RKQSNRESAR RSRLRKQAEC EELQRRVEAL SHENHSLKDE 300 LQRLSEECEK LTSENNLIKE ELTLLCGPDV VSKLERNDNV ARIQSNVEEA S |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 269 | 275 | RRSRLRK |
2 | 269 | 276 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00039 | PBM | Transfer from AT4G36730 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | X74942 | 0.0 | X74942.1 L.esculentum GBF4 mRNA for G-box binding protein. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015063525.1 | 0.0 | G-box-binding factor 1 isoform X2 | ||||
Swissprot | P42774 | 1e-107 | GBF1_ARATH; G-box-binding factor 1 | ||||
TrEMBL | M1AYD7 | 0.0 | M1AYD7_SOLTU; Uncharacterized protein | ||||
STRING | XP_009803268.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3780 | 24 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G36730.2 | 1e-84 | G-box binding factor 1 |