PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g026770.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 338aa    MW: 38159.4 Da    PI: 7.2255
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g026770.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.12.5e-12200225126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       y   +C+++ +tG+C yGd+CkF+H+
  Sopen02g026770.1 200 YQPDICKDYKETGYCGYGDSCKFMHD 225
                       67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.96E-9198230IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7199226IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878199227IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-10200225IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-12200230IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.101.6E-13261319IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139201.6E-8277319No hitNo description
SuperFamilySSF578501.69E-13277320No hitNo description
SMARTSM001841.2E-4278315IPR001841Zinc finger, RING-type
PROSITE profilePS5008910.571278316IPR001841Zinc finger, RING-type
CDDcd001621.37E-8278319No hitNo description
PROSITE patternPS005180293302IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MENSNTPASD SNAAKAEAEQ LPTAPVCNFF KKPSRGKNIR KRPTVEEGEN EDAEGDSSVI  60
YTKKKPAVAN NKLHFSTGPS KSNKDTDSNV DSKAARFHFE SSKEIQVQND SRATATLETE  120
TEFSRDARAI RERALKQAEE ALKGKSKTGG DEKLYKGMNQ YTDYKAGLRR EHTISSEKAG  180
GAHGPLRASA HIRVSARFDY QPDICKDYKE TGYCGYGDSC KFMHDRGDYK SGWQMEREWD  240
EAEKERKRKL ALGMLNEDDE DAEKSDEDDD DDALPFACFI CREPFVDPVM TKCKHYFCEH  300
CALKHHAKNK KCYVCNQPTL GIFNTAFEIR KRMAAQGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M1e-682633314317RING finger protein 113A
5z58_M1e-682633314317RING finger protein 113A
6ff4_t1e-682633314317RING finger protein 113A
6ff7_t1e-682633314317RING finger protein 113A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015066007.10.0zinc finger CCCH domain-containing protein 1 isoform X2
RefseqXP_027770876.10.0zinc finger CCCH domain-containing protein 1 isoform X1
RefseqXP_027770877.10.0zinc finger CCCH domain-containing protein 1 isoform X2
RefseqXP_027770878.10.0zinc finger CCCH domain-containing protein 1 isoform X2
RefseqXP_027770879.10.0zinc finger CCCH domain-containing protein 1 isoform X2
RefseqXP_027770880.10.0zinc finger CCCH domain-containing protein 1 isoform X2
RefseqXP_027770881.10.0zinc finger CCCH domain-containing protein 1 isoform X2
SwissprotQ8GX841e-157C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A0V0IA820.0A0A0V0IA82_SOLCH; Putative zinc finger CCCH domain-containing protein 1-like
STRINGPGSC0003DMT4000355220.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44032337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-159C3H family protein