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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sopen02g026770.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
C3H |
| Protein Properties |
Length: 338aa MW: 38159.4 Da PI: 7.2255 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopen02g026770.1 | genome | spenn | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 38.1 | 2.5e-12 | 200 | 225 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
y +C+++ +tG+C yGd+CkF+H+
Sopen02g026770.1 200 YQPDICKDYKETGYCGYGDSCKFMHD 225
67789********************7 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SuperFamily | SSF90229 | 1.96E-9 | 198 | 230 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.1E-7 | 199 | 226 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.878 | 199 | 227 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 4.7E-10 | 200 | 225 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.7E-12 | 200 | 230 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:3.30.40.10 | 1.6E-13 | 261 | 319 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| Pfam | PF13920 | 1.6E-8 | 277 | 319 | No hit | No description |
| SuperFamily | SSF57850 | 1.69E-13 | 277 | 320 | No hit | No description |
| SMART | SM00184 | 1.2E-4 | 278 | 315 | IPR001841 | Zinc finger, RING-type |
| PROSITE profile | PS50089 | 10.571 | 278 | 316 | IPR001841 | Zinc finger, RING-type |
| CDD | cd00162 | 1.37E-8 | 278 | 319 | No hit | No description |
| PROSITE pattern | PS00518 | 0 | 293 | 302 | IPR017907 | Zinc finger, RING-type, conserved site |
| Sequence ? help Back to Top |
| Protein Sequence Length: 338 aa
Download sequence Send
to blast |
MENSNTPASD SNAAKAEAEQ LPTAPVCNFF KKPSRGKNIR KRPTVEEGEN EDAEGDSSVI 60
YTKKKPAVAN NKLHFSTGPS KSNKDTDSNV DSKAARFHFE SSKEIQVQND SRATATLETE 120
TEFSRDARAI RERALKQAEE ALKGKSKTGG DEKLYKGMNQ YTDYKAGLRR EHTISSEKAG 180
GAHGPLRASA HIRVSARFDY QPDICKDYKE TGYCGYGDSC KFMHDRGDYK SGWQMEREWD 240
EAEKERKRKL ALGMLNEDDE DAEKSDEDDD DDALPFACFI CREPFVDPVM TKCKHYFCEH 300
CALKHHAKNK KCYVCNQPTL GIFNTAFEIR KRMAAQGK
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5z56_M | 1e-68 | 26 | 333 | 14 | 317 | RING finger protein 113A |
| 5z58_M | 1e-68 | 26 | 333 | 14 | 317 | RING finger protein 113A |
| 6ff4_t | 1e-68 | 26 | 333 | 14 | 317 | RING finger protein 113A |
| 6ff7_t | 1e-68 | 26 | 333 | 14 | 317 | RING finger protein 113A |
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