PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ERF

Protein Properties

Length: 297aa MW: 34171.6 Da PI: 5.0742

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen01g039250.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60.5	3.8e-19	94	145	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++++GVr+++ +g+W AeIrdp++ ++r++lg+f+taeeAa + a+ +l+g+ Sopen01g039250.1 94 KKFRGVRQRP-WGKWSAEIRDPVK---KTRVWLGTFDTAEEAAMKYNIAAIQLRGA 145 59******.******654...5***********************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	7.46E-32	94	151	No hit	No description
SuperFamily	SSF54171	5.89E-21	95	151	IPR016177	DNA-binding domain
PROSITE profile	PS51032	22.972	95	152	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.4E-28	95	152	IPR001471	AP2/ERF domain
SMART	SM00380	1.0E-34	95	158	IPR001471	AP2/ERF domain
Pfam	PF00847	8.5E-12	95	144	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.0E-11	96	107	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.0E-11	118	134	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MESQKIKKKL VHKTITTKYD HHNKWTPKVV RICYTDCDAT DSSSDDDDDE RNRVKKYVTE 60 IKFEKKMAAA DVRKSLNSNK KKKVIDSKRD ENVKKFRGVR QRPWGKWSAE IRDPVKKTRV 120 WLGTFDTAEE AAMKYNIAAI QLRGADAIIN FIETPLPKEK ENIIITSVSD YDSTGECENL 180 CSPTSVLRQN NNNNNNDKDN EDAIGIDTKI MNDESKKMEI DENGFMFDDN LPLMDQSFLK 240 DFFDFRSPSP LMDDVLLPGF SDGMGLLPEV LSIHGNKMLD EDLETCKWAN DFFQDVC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	6e-22	94	151	1	59	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:16832061}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	0.0	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015085764.1	0.0	pathogenesis-related genes transcriptional activator PTI6
Swissprot	Q9SUE3	4e-42	CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBL	A0A3Q7ELA9	0.0	A0A3Q7ELA9_SOLLC; Uncharacterized protein
STRING	Solyc01g095500.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA494	23	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27950.1	4e-40	cytokinin response factor 4

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zwack PJ,Compton MA,Adams CI,Rashotte AM Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance. Plant Cell Rep., 2016. 35(3): p. 573-84 [PMID:26650835] Raines T, et al. The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis. Plant J., 2016. 85(1): p. 134-47 [PMID:26662515]