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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopen01g030710.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
M-type_MADS |
Protein Properties |
Length: 197aa MW: 22248.8 Da PI: 6.561 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopen01g030710.1 | genome | spenn | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 73.2 | 2.1e-23 | 14 | 61 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
ri+n++ rq tfskRr g++KKA+ELS+LC+a+v ++++s+++k+y +
Sopen01g030710.1 14 RIQNQTSRQATFSKRRFGLFKKASELSTLCGADVGIVVYSPSNKVYSF 61
89********************************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 197 aa
Download sequence Send
to blast |
MRRPNNRRRI QIVRIQNQTS RQATFSKRRF GLFKKASELS TLCGADVGIV VYSPSNKVYS 60 FGHPSVESIV ERFLGEDPTA STNDRNPMII AQQNANEDEI NRKLNTLERE LEKEKKRGQT 120 LQALRTEPSH EKRSFSGLKS LFEALEAADE EVERVVSQLL EADEVFPYQT IGSALDPLIV 180 RENTSSNFGE GSSQSSE
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
3kov_A | 3e-16 | 7 | 73 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3kov_B | 3e-16 | 7 | 73 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3kov_I | 3e-16 | 7 | 73 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3kov_J | 3e-16 | 7 | 73 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3p57_A | 3e-16 | 7 | 73 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3p57_B | 3e-16 | 7 | 73 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3p57_C | 3e-16 | 7 | 73 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3p57_D | 3e-16 | 7 | 73 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3p57_I | 3e-16 | 7 | 73 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3p57_J | 3e-16 | 7 | 73 | 2 | 68 | Myocyte-specific enhancer factor 2A |
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}. |