PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen01g029510.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB_related

Protein Properties

Length: 1132aa MW: 126598 Da PI: 8.8051

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen01g029510.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.8	2.1e-07	48	83	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++e+ ++++a +++G++ Wk++++ + R+++++ Sopen01g029510.1 48 QWSEEDLTRFYQAYRKYGKD-WKKVSSAVK-FRSAEMV 83 6***************99.****998.9988766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0029	45	93	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	4.93E-9	47	93	IPR009057	Homeodomain-like
Pfam	PF00249	1.9E-6	48	83	IPR001005	SANT/Myb domain
CDD	cd00167	3.92E-5	49	83	No hit	No description
SMART	SM01135	4.8E-57	627	728	IPR033471	DIRP domain
Pfam	PF06584	1.2E-32	627	727	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1132 aa Download sequence Send to blast
MAPAKKVRSL SKRQSLTTDI SPSKDGNADN AKKSLQRKKK LSDMLGPQWS EEDLTRFYQA 60 YRKYGKDWKK VSSAVKFRSA EMVEALYTMN RAYLSLPEGT ASVAGLIAMM TDHYCNLAAS 120 DSEQESNEDA GTSRKFQNRA RVKVLPDTSK ASEMTSSALA ASHGCLTLLK KKRSGGSRPR 180 AVGKRTPRFP VSFSYENPKG EKYFSPSRQS LKLQADDSDD DVKIALVLTE ASQRGGSPQV 240 SKTPNHRTDG AMTSPIGTAE RKRVKMDMGN VKLLSNEVDG EEGSMEADTG ELMRYKNELG 300 ESGTVGRTTQ KRKRPYGRKL EVDDSGDNHF DDIREACSGT EEGQKLGAAR GQLEMEATNE 360 KNSRKRSKKV LFGRDESSAF DALQTLADLS LMMPTAENED ESMIQVKDEI DDHVDESGSL 420 EAIPAHRQRD KRGSMGVKSR WSQPLSKFEV ASSTVSKHGR VTPTDANTGS EAKQARKAQK 480 AMSSKARKAE GHVNYDVTES QEAAAKEASK KSTNKGKRSY QVSPKFIKDQ EHSSCADPRT 540 ERSDSAQSTA QIPVENQVNL PTKVRSRRKM DLKKPQRQKD SKMSDKGLDD TSASFTALCD 600 KAFSLKKKIS SCLSNHQVRR WCTYEWFYSA IDYPWFAKRE FVEYLYHVGL GHVPRLTRVE 660 WGVIRSSLGK PRRFSEQFLN EEKEKLNQYR ESVRSHYTEL REGTREGLPT DLARPLSVGQ 720 RVIAIHPKTR EIHDGNVLTV DHSRCRVQFD RPELGVEFVM DIDCMPLNPF ENMPTLLTRH 780 ADAVDKFFES SNELKINARA NEFMQFPAGD SQENGDISSH FSPPNHPISN LLKQTKVVSA 840 EADMQSKSGV METTAFQQIA YSKPSAVALI QAKEADVQAL AELTRALDKK DAVVSELRRM 900 NDDVLENQKS GDCSLKDSEP FKKQYAAVLI QLNEVNEQVS SALFRLRQRN TYHGSIPLAW 960 PRPVPNFADP SIASTFDRCT NQPQESGFLV NEIIENSKIK SRTMVDAAVQ AMLSFTGRDN 1020 TTEKIEEAID YVNDRILLDD SCVPTPPDLK SKNMSDRNEA EIPSELITKC VSTLLMIQKC 1080 TERQFPPADV AKVLDSAVAS LQPCCSQNFP LYAEIQKCMR IIKNQILALV PT

Sequence ? help Back to Top

Protein Sequence Length: 1132 aa Download sequence Send to blast

MAPAKKVRSL SKRQSLTTDI SPSKDGNADN AKKSLQRKKK LSDMLGPQWS EEDLTRFYQA  60
YRKYGKDWKK VSSAVKFRSA EMVEALYTMN RAYLSLPEGT ASVAGLIAMM TDHYCNLAAS  120
DSEQESNEDA GTSRKFQNRA RVKVLPDTSK ASEMTSSALA ASHGCLTLLK KKRSGGSRPR  180
AVGKRTPRFP VSFSYENPKG EKYFSPSRQS LKLQADDSDD DVKIALVLTE ASQRGGSPQV  240
SKTPNHRTDG AMTSPIGTAE RKRVKMDMGN VKLLSNEVDG EEGSMEADTG ELMRYKNELG  300
ESGTVGRTTQ KRKRPYGRKL EVDDSGDNHF DDIREACSGT EEGQKLGAAR GQLEMEATNE  360
KNSRKRSKKV LFGRDESSAF DALQTLADLS LMMPTAENED ESMIQVKDEI DDHVDESGSL  420
EAIPAHRQRD KRGSMGVKSR WSQPLSKFEV ASSTVSKHGR VTPTDANTGS EAKQARKAQK  480
AMSSKARKAE GHVNYDVTES QEAAAKEASK KSTNKGKRSY QVSPKFIKDQ EHSSCADPRT  540
ERSDSAQSTA QIPVENQVNL PTKVRSRRKM DLKKPQRQKD SKMSDKGLDD TSASFTALCD  600
KAFSLKKKIS SCLSNHQVRR WCTYEWFYSA IDYPWFAKRE FVEYLYHVGL GHVPRLTRVE  660
WGVIRSSLGK PRRFSEQFLN EEKEKLNQYR ESVRSHYTEL REGTREGLPT DLARPLSVGQ  720
RVIAIHPKTR EIHDGNVLTV DHSRCRVQFD RPELGVEFVM DIDCMPLNPF ENMPTLLTRH  780
ADAVDKFFES SNELKINARA NEFMQFPAGD SQENGDISSH FSPPNHPISN LLKQTKVVSA  840
EADMQSKSGV METTAFQQIA YSKPSAVALI QAKEADVQAL AELTRALDKK DAVVSELRRM  900
NDDVLENQKS GDCSLKDSEP FKKQYAAVLI QLNEVNEQVS SALFRLRQRN TYHGSIPLAW  960
PRPVPNFADP SIASTFDRCT NQPQESGFLV NEIIENSKIK SRTMVDAAVQ AMLSFTGRDN  1020
TTEKIEEAID YVNDRILLDD SCVPTPPDLK SKNMSDRNEA EIPSELITKC VSTLLMIQKC  1080
TERQFPPADV AKVLDSAVAS LQPCCSQNFP LYAEIQKCMR IIKNQILALV PT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	0.0	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015063174.1	0.0	protein ALWAYS EARLY 3
Swissprot	Q6A332	0.0	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	A0A3Q7EGH8	0.0	A0A3Q7EGH8_SOLLC; Uncharacterized protein
STRING	Solyc01g067560.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3312	23	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]