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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc12g087830.1.1 |
Common Name | LOC101247413 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
MIKC_MADS |
Protein Properties |
Length: 199aa MW: 22643.3 Da PI: 8.9663 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc12g087830.1.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 82 | 3.9e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
kri++k rqv f+kRr+g+lKKA+E+S+LCd++vav+i+s++g+l+e+ss
Solyc12g087830.1.1 9 KRIQDKNCRQVAFCKRRKGLLKKAKEISILCDVDVAVVIISNRGRLHEFSS 59
79***********************************************96 PP
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2 | K-box | 40.7 | 1e-14 | 81 | 167 | 13 | 99 |
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99
+ae e++ e Lq++ R+l + + L+l +L +Le++L+++l + R++K++l+le+ + l +kek l ee+k L+ +++
Solyc12g087830.1.1 81 NAEIQVAEVSGFTTMGELLQTTERQLEETNADGLTLTDLIHLENELQTALIHLRARKTHLMLESAKVLHEKEKLLLEEKKHLEDNIA 167
555556677777888899****************************************************************98875 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009910 | Biological Process | negative regulation of flower development |
GO:0010048 | Biological Process | vernalization response |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 199 aa
Download sequence Send
to blast |
MGRRKVEIKR IQDKNCRQVA FCKRRKGLLK KAKEISILCD VDVAVVIISN RGRLHEFSSN 60 NSMTAMLRRY ESHVGAEKEI NAEIQVAEVS GFTTMGELLQ TTERQLEETN ADGLTLTDLI 120 HLENELQTAL IHLRARKTHL MLESAKVLHE KEKLLLEEKK HLEDNIASIK KNTKVNEMSD 180 LPAPHMICGQ QKVTLNFF*
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