PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ERF

Protein Properties

Length: 200aa MW: 22541.8 Da PI: 4.5627

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc11g006050.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	65.5	1.1e-20	63	113	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+++AeIrd s+++ + r++lg+f+taeeAa a+++a+ +l+g Solyc11g006050.1.1 63 SYRGVRRRP-WGKYAAEIRD-STRN-SVRVWLGTFDTAEEAALAYDQAAYALHG 113 6******.******.3433.6***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	23.09	63	121	IPR001471	AP2/ERF domain
SMART	SM00380	7.1E-32	63	127	IPR001471	AP2/ERF domain
Pfam	PF00847	1.4E-14	63	113	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	5.69E-23	63	123	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	2.5E-29	63	122	IPR001471	AP2/ERF domain
CDD	cd00018	7.99E-29	64	122	No hit	No description
PRINTS	PR00367	2.0E-11	64	75	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.0E-11	87	103	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MDSSSSSSSY SYSQYHDHDL GFNENDTEDM LLLNVLSEAK EDSSSNNIHE ETNEGSSKEV 60 ATSYRGVRRR PWGKYAAEIR DSTRNSVRVW LGTFDTAEEA ALAYDQAAYA LHGRVAVLNY 120 PVEMVYRSLM EIDCRFEDGC SPVLALKKWH SMMKKGNNKS SSSNKKKEEK EMSYENVLVL 180 EDLGADYLEE ILMLSESNS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	4e-28	64	123	15	74	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269\|PubMed:23057995, ECO:0000269\|PubMed:28733419}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc11g006050.1.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269\|PubMed:28733419}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004250457.1	1e-145	ethylene-responsive transcription factor 1B-like
Swissprot	A0A3Q7I5Y9	1e-61	ERFC3_SOLLC; Ethylene-response factor C3
TrEMBL	A0A3Q7IPE4	1e-144	A0A3Q7IPE4_SOLLC; Uncharacterized protein
STRING	Solyc11g006050.1.1	1e-144	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA21	24	1165
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23240.1	8e-43	ethylene response factor 1

Link Out ? help Back to Top
Phytozome	Solyc11g006050.1.1
Entrez Gene	101265792

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Pirrello J, et al. Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene. BMC Plant Biol., 2012. 12: p. 190 [PMID:23057995] Du M, et al. MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato. Plant Cell, 2017. 29(8): p. 1883-1906 [PMID:28733419]