PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB

Protein Properties

Length: 297aa MW: 33173.9 Da PI: 7.4474

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc09g008250.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.6	9e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l++++ ++G+g +W + +++ g++R++k+c++rw++yl Solyc09g008250.2.1 14 KGPWSPEEDAKLKEYIDKFGTGgNWIALPQKAGLRRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	39.4	1.4e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ eEd ++ + + G++ W+ Ia+ ++ gRt++++k++w++ Solyc09g008250.2.1 69 GEFSDEEDRIICSLYANIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 789****************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.9	9	62	IPR017930	Myb domain
SuperFamily	SSF46689	3.76E-27	11	109	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-11	13	64	IPR001005	SANT/Myb domain
Pfam	PF00249	5.7E-15	14	62	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-24	15	69	IPR009057	Homeodomain-like
CDD	cd00167	8.35E-9	16	62	No hit	No description
PROSITE profile	PS51294	22.283	63	117	IPR017930	Myb domain
SMART	SM00717	8.8E-12	67	115	IPR001005	SANT/Myb domain
Pfam	PF00249	2.6E-11	69	111	IPR001005	SANT/Myb domain
CDD	cd00167	1.86E-8	70	113	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.9E-24	70	117	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKEYID KFGTGGNWIA LPQKAGLRRC GKSCRLRWLN 60 YLRPNIKHGE FSDEEDRIIC SLYANIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGF 120 VSSSHKIRPL NHHDYHHQIP TNCYNNYSSL VQASSLLISS NYPNNTTFPC YETNIPSTTP 180 SSTSFLSAGA STSCTSGITA STFAGRTTSS DESYDISNFN FHSYMYNNNG VISEGEKLIS 240 GNNASGCYVD EQQNPLDYSS LEEIKDLIST NHGTCNSTSF LLDHEIKTEE KVIMYY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-26	14	117	7	108	B-MYB
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.16841	0.0	callus\| leaf\| root\| stem\| trichome

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc09g008250.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001315982.1	0.0	protein blind-like1
TrEMBL	A0A3Q7HYM4	0.0	A0A3Q7HYM4_SOLLC; Uncharacterized protein
STRING	Solyc09g008250.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	2e-80	myb domain protein 36

Link Out ? help Back to Top
Phytozome	Solyc09g008250.2.1
Entrez Gene	101261262

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]