|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Solyc08g067230.2.1 |
Common Name | LOC101265756 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
Family |
MIKC_MADS |
Protein Properties |
Length: 211aa MW: 24740.2 Da PI: 8.6912 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc08g067230.2.1 | genome | ITAG | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 94.7 | 4.3e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien+snrqvt+skRrngilKKA+E+SvLCda v+viif+++gk++e+ss
Solyc08g067230.2.1 9 KRIENSSNRQVTYSKRRNGILKKAKEISVLCDAHVSVIIFATSGKMHEFSS 59
79***********************************************96 PP
|
2 | K-box | 92.3 | 8.5e-31 | 69 | 164 | 1 | 96 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91
y+k +g++l++ak+e+l++e++k+kk ++n+q e+Rhl+Ged++sL+++eL+ Le++Le++l+ iR+k+ne+++++ +++q++e+e+++ n
Solyc08g067230.2.1 69 YHKLTGRRLWDAKHENLDNEINKVKKDNDNMQIELRHLKGEDISSLNYRELMILEDALENGLTGIREKQNEFMRMMRKKTQNMEQEQDQLN 159
78999999*********************************************************************************** PP
K-box 92 kaLrk 96
+Lr+
Solyc08g067230.2.1 160 CQLRQ 164
***98 PP
|
Protein Features
? help Back to Top |
|
Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 3.2E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.001 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.90E-42 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 1.06E-35 | 2 | 94 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.7E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.1E-17 | 80 | 162 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.226 | 82 | 173 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 211 aa
Download sequence Send
to blast |
MGRGKIEIKR IENSSNRQVT YSKRRNGILK KAKEISVLCD AHVSVIIFAT SGKMHEFSST 60 SLVDILDQYH KLTGRRLWDA KHENLDNEIN KVKKDNDNMQ IELRHLKGED ISSLNYRELM 120 ILEDALENGL TGIREKQNEF MRMMRKKTQN MEQEQDQLNC QLRQLEIASM NRNMGEIGEV 180 FEQTRENHDY GQMPFAFRVQ PMQPNLHQRF *
|
Expression --
Description ? help
Back to Top |
Source |
Description |
Uniprot | TISSUE SPECIFICITY: Petals. |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Probable transcription factor. |
Function -- GeneRIF ? help
Back to Top |
- Results provide evidence that SlGLO1 plays important role in regulating plant floral organ and pollen development in tomato.
[PMID: 26842499]
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | DQ437764 | 3e-78 | Lycopersicon esculentum cultivar Cerasiforme P30 marker genomic sequence |
Publications
? help Back to Top |
- Immink RG, et al.
Analysis of the petunia MADS-box transcription factor family. Mol. Genet. Genomics, 2003. 268(5): p. 598-606 [PMID:12589434] - Angenent GC,Busscher M,Franken J,Mol JN,van Tunen AJ
Differential expression of two MADS box genes in wild-type and mutant petunia flowers. Plant Cell, 1992. 4(8): p. 983-93 [PMID:1356537] - Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] - Guo X, et al.
The tomato floral homeotic protein FBP1-like gene, SlGLO1, plays key roles in petal and stamen development. Sci Rep, 2016. 6: p. 20454 [PMID:26842499]
|