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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc08g062960.2.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
HSF |
Protein Properties |
Length: 352aa MW: 40089.1 Da PI: 4.6565 |
Description |
HSF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc08g062960.2.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HSF_DNA-bind | 112.4 | 3.1e-35 | 32 | 123 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92
Fl+k+ye++ed++++++isws++ nsf+v+d+++f++++Lp++Fkhsnf+SF+RQLn+YgF+kv+ ++ weF++ F g+k+
Solyc08g062960.2.1 32 FLSKTYEMVEDSSTDQVISWSTTRNSFIVWDSHKFSTTLLPRFFKHSNFSSFIRQLNTYGFRKVDPDR---------WEFANGGFLGGQKH 113
9****************************************************************999.........************** PP
XXXXXXXXXX CS
HSF_DNA-bind 93 llekikrkks 102
ll++ikr+++
Solyc08g062960.2.1 114 LLKTIKRRRN 123
*******986 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009644 | Biological Process | response to high light intensity |
GO:0010200 | Biological Process | response to chitin |
GO:0010286 | Biological Process | heat acclimation |
GO:0034605 | Biological Process | cellular response to heat |
GO:0034620 | Biological Process | cellular response to unfolded protein |
GO:0042542 | Biological Process | response to hydrogen peroxide |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0071456 | Biological Process | cellular response to hypoxia |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 352 aa
Download sequence Send
to blast |
MEDVVKVKVE EDGIPTAVLP MEGLHDVGPP PFLSKTYEMV EDSSTDQVIS WSTTRNSFIV 60 WDSHKFSTTL LPRFFKHSNF SSFIRQLNTY GFRKVDPDRW EFANGGFLGG QKHLLKTIKR 120 RRNVGQSMNQ QGSGACIEIG YYGMEEELER LKRDKNVLMT EIVKLRQQQQ STRNHIIAMG 180 EKIETQERKQ VQMMSFLAKI FSNPTFLQQY LDKHVHRKDK QRIEVGQKRR LTMTPSATGS 240 DQPMNYSSSH QESEAELASI EMLFSAAMDN ESSSNVRPDS VVTANGTDME PVADDIWEEL 300 LSEDLISGDR AAEEVVVVEQ PEFDVEVEDL VVKTPEWGEE LQDLVDQLGF L*
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Functional Description ? help
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Source |
Description |
UniProt | DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP011551 | 0.0 | Solanum lycopersicum DNA, chromosome 8, clone: C08SLe0087H10, complete sequence |