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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc07g006750.2.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
MYB |
Protein Properties |
Length: 425aa MW: 48456.9 Da PI: 9.4647 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc07g006750.2.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 47.3 | 4.6e-15 | 72 | 120 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
+g+W++eEd l+ ++++ G+g +W + ++++g++R++k+c++rw++yl
Solyc07g006750.2.1 72 KGPWSPEEDATLKAYIEENGTGnNWIALPQKIGLKRCGKSCRLRWLNYL 120
79*********************************************97 PP
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2 | Myb_DNA-binding | 38.6 | 2.5e-12 | 127 | 169 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
g +T+eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++
Solyc07g006750.2.1 127 GGFTEEEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 169
569******************.*********.***********97 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0008285 | Biological Process | negative regulation of cell proliferation |
GO:0035987 | Biological Process | endodermal cell differentiation |
GO:0045597 | Biological Process | positive regulation of cell differentiation |
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:2000021 | Biological Process | regulation of ion homeostasis |
GO:2000067 | Biological Process | regulation of root morphogenesis |
GO:0048226 | Cellular Component | Casparian strip |
GO:0000975 | Molecular Function | regulatory region DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 425 aa
Download sequence Send
to blast |
MRRLFWFFKS MTSLIIHSFS TYKIKSSLLK IFQINNYHKI FQSIKKKKFG SNKKFKKNMG 60 RAPCCDKANV KKGPWSPEED ATLKAYIEEN GTGNNWIALP QKIGLKRCGK SCRLRWLNYL 120 RPNIKHGGFT EEEDNIICSL YISIGSRWSI IAAQLPGRTD NDIKNYWNTR LKKKLLGKRK 180 QSQMNRLLLA NGGQDLKDIN GLEENPLLQN LSNSALERLQ LHMQLQTLQN PLSFYNNPSL 240 WPKLTPLQQK MIQTLQSNGL NENQSPLYTP INPSENHAHE LGQKVGINEF ASTKVNVEVE 300 KSIPINDFNN NQKNVLDTNI GQENAKEIQI QGVQGFTQLE IDDLILNNKG SIGLNMHSEN 360 QQIGSEFDCF KEMDDGSRDN LAWWSNDFDT NTASSSNSWG SSSNILQNSH EGMYQDYALG 420 YNLQ*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: In roots, expressed in endodermal cells from the late elongation zones to the differentiation zone and, to a lower extent, in endodermal cells of the meristematic zone. {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}. |
Uniprot | TISSUE SPECIFICITY: Expressed in leaves, roots (endodermis-specific) and seedlings. {ECO:0000269|PubMed:16461581, ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322, ECO:0000269|PubMed:9839469}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}. |