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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc07g006630.2.1 |
Common Name | LOC100191137 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
CO-like |
Protein Properties |
Length: 387aa MW: 42603.8 Da PI: 6.8182 |
Description |
CO-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc07g006630.2.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 21.1 | 6.7e-07 | 25 | 61 | 4 | 40 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkgHtvv 40
+ C+ ++ + fC+++++++C +C + H +H++v
Solyc07g006630.2.1 25 KSCEYCHLAAALVFCRTDNTFVCLSCDTRLHARHERV 61
68*****999************************976 PP
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2 | zf-B_box | 25.1 | 3.6e-08 | 61 | 106 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
++C+ +e+ ++ C+ + lC C +H+ H++vp+
Solyc07g006630.2.1 61 VWVCEVCEQAAASVTCRADAAALCVACDRDIHSAnplarrHERVPV 106
689*******9*********************66899999999986 PP
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3 | CCT | 69.8 | 6.8e-24 | 307 | 350 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
Rea++lRY+eK+k+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
Solyc07g006630.2.1 307 REARVLRYREKKKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 350
9*****************************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 387 aa
Download sequence Send
to blast |
MGIFREAPNC FPGGWNIGAA ARMAKSCEYC HLAAALVFCR TDNTFVCLSC DTRLHARHER 60 VWVCEVCEQA AASVTCRADA AALCVACDRD IHSANPLARR HERVPVVPFY DPVESVVKST 120 AATLLVSING TTTTATTTAT ITPELGKVDT CIGHHENNND PWIPPNTITS KLPLNTEMKG 180 MDFIFTDSEN FLDFDYPACV DTQSQPHYNS SNDSVVPVQA NTPIKSLPFH HQEKHFEIDF 240 TQSHIKSYNT PSLSVSSSSL DVGIVPDGSS ISEISYPYIR TMNNSNSSID LSNSANHQGE 300 KLLGLDREAR VLRYREKKKN RKFEKTIRYA SRKAYAETRP RIKGRFAKRT DGSAGAGEFD 360 DVDGIFSGTD FIAAESRYGV VPSFLT*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU636698 | 0.0 | Solanum lycopersicum CONSTANS-like protein mRNA, complete cds |
GenBank | GQ261228 | 0.0 | Solanum lycopersicum cultivar Rio Grande PtoR Hop-interacting protein THI010 mRNA, complete cds |