PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

C2H2

Protein Properties

Length: 363aa MW: 40783 Da PI: 7.1839

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc05g055500.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.0006	152	174	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++Fs+ L H +H Solyc05g055500.1.1 152 YECKTCNRTFSSFQALGGHRASH 174 99**********99999998887 PP
2	zf-C2H2	14.4	0.00011	247	269	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++Cg F++ L H+r+H Solyc05g055500.1.1 247 HKCSYCGAEFTSGQALGGHMRRH 269 79********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	1.4E-12	151	176	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.77E-8	151	174	No hit	No description
SMART	SM00355	0.063	152	174	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	12.258	152	179	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	154	174	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.77E-8	242	269	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.5E-4	245	271	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.005	247	269	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	5.4E-12	247	271	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.554	247	274	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	249	269	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MEAPQEEVMG GVSKGKRTKR VRPQSLITFM TINNAHSSLT GDTNVDGTVN GEEVNDDDNN 60 NNNDSSPPCT TSGKNFLDDD DVPTEEEEET AKCLILLSQG GHHHHHRRQT PPKKFFDLFN 120 DDMGLYQTKF NSKRYVETTD LGNGAKVGTY VYECKTCNRT FSSFQALGGH RASHKKPKPL 180 TIEPKKHPFF YFSDQDELSP PPATTTPTNY KYNNKLSPTL SPLSSQFNNI NMESSPNYNK 240 SQSPRIHKCS YCGAEFTSGQ ALGGHMRRHR GGANINNTIL CLSPLSIDQE YANYNLKKPR 300 NGLSLDLNLP APQDYQNQSR NLQHPPKYPQ EQAQKQQQEQ QQEQQQTTLV LSTTPQLIDC 360 HY*

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MEAPQEEVMG GVSKGKRTKR VRPQSLITFM TINNAHSSLT GDTNVDGTVN GEEVNDDDNN  60
NNNDSSPPCT TSGKNFLDDD DVPTEEEEET AKCLILLSQG GHHHHHRRQT PPKKFFDLFN  120
DDMGLYQTKF NSKRYVETTD LGNGAKVGTY VYECKTCNRT FSSFQALGGH RASHKKPKPL  180
TIEPKKHPFF YFSDQDELSP PPATTTPTNY KYNNKLSPTL SPLSSQFNNI NMESSPNYNK  240
SQSPRIHKCS YCGAEFTSGQ ALGGHMRRHR GGANINNTIL CLSPLSIDQE YANYNLKKPR  300
NGLSLDLNLP APQDYQNQSR NLQHPPKYPQ EQAQKQQQEQ QQEQQQTTLV LSTTPQLIDC  360
HY*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00487	DAP	Transfer from AT5G04390	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc05g055500.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC205681	3e-08	Solanum lycopersicum chromosome 5 clone C05HBa0025A19, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010321336.1	0.0	zinc finger protein ZAT5-like
TrEMBL	A0A3Q7GQL2	0.0	A0A3Q7GQL2_SOLLC; Uncharacterized protein
STRING	Solyc05g055500.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4015	23	43
Representative plant	OGRP2350	10	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	1e-46	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Solyc05g055500.1.1
Entrez Gene	101265240

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]