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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc05g051830.2.1 |
Common Name | LOC101249083 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
M-type_MADS |
Protein Properties |
Length: 390aa MW: 44560 Da PI: 5.9122 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc05g051830.2.1 | genome | ITAG | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 78.1 | 6.3e-25 | 10 | 58 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
+ie+ +nrqvtfskRrngilKK +ELSvLCd++v +i+fs++g+l ys
Solyc05g051830.2.1 10 KIESLTNRQVTFSKRRNGILKKVYELSVLCDVDVGIIMFSPSGRLTHYS 58
59********************************************998 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 390 aa
Download sequence Send
to blast |
MGRSKLPLLK IESLTNRQVT FSKRRNGILK KVYELSVLCD VDVGIIMFSP SGRLTHYSRK 60 RRIEDILSEL ISLPDSERGF YINNKESVLW NLRKIEIEDK FCDIERINPA YVNANDTTKK 120 IQDEINGLHC KLDEAEGLLR IFEPDTQRIT SLHELDLCEK RLQVALNQVR QRMEQLSSNN 180 TPSYEDNMAQ INELLQHIDN TQVHEKPPYD LWLELEDYNH ENNNINSPLY TASETSSISQ 240 SSMNLPSSTT YDTMSQTSLS GETYQNNNNF KQSQHSTRTL PNLTLQTSFK FAKPEMSQTS 300 IEGSFSCLTD ENLKKSICSN RVFPAITPLQ TSFSFAKAEM ETPTSALRPL APYLQAEATT 360 SSCTNQEGNN EMSWFQPKVK KSKQYHSID*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 376 | 383 | PKVKKSKQ |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | JQ002549 | 2e-09 | Solanum lycopersicum cultivar Marglob mismatch repair protein (msh2) mRNA, partial cds |