PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc05g005380.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NF-YB

Protein Properties

Length: 358aa MW: 38026 Da PI: 5.9629

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc05g005380.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	155.5	9.3e-49	53	146	2	95
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 reqd+f+Pianv+rim+++lP++akis+ +k+t+qecvsefisf t ea+d+cq e+rkt++++d+lwa++++Gf+dy+epl++yl++yre Solyc05g005380.1.1 53 REQDQFMPIANVVRIMRRILPSHAKISDGSKQTIQECVSEFISFTTLEANDRCQSEQRKTVTPEDILWAMSKVGFDDYIEPLTLYLNQYRE 143 89***************************************************************************************** PP NF-YB 93 leg 95 ++g Solyc05g005380.1.1 144 FDG 146 987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	9.9E-44	49	152	IPR009072	Histone-fold
SuperFamily	SSF47113	2.26E-34	55	152	IPR009072	Histone-fold
Pfam	PF00808	4.3E-22	58	122	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.6E-13	86	104	No hit	No description
PRINTS	PR00615	3.6E-13	105	123	No hit	No description
PRINTS	PR00615	3.6E-13	124	142	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MTNGNHVGSG NGGFHSYRRS PQPTPARSPS SDMERSMGMP AHLNQAITEC ITREQDQFMP 60 IANVVRIMRR ILPSHAKISD GSKQTIQECV SEFISFTTLE ANDRCQSEQR KTVTPEDILW 120 AMSKVGFDDY IEPLTLYLNQ YREFDGGESE SLRGETLLVK QQMAHDHGYF VSPPPMDNND 180 MQGDASNGST SQCAVASVDS DIESPAEEGY SRSNAAATLP SPLLGYSRSN AAATLPSPLS 240 GYSRSNAAAT LPSPLSGYSR SNAAATLPSP LSGYSRSNAA ATLPSPLSGY SRSNAAATLP 300 SPLSGYSRSN AAATLPSPLL GYSRSNAAAT LPSPLLGYSR SNAAATPPSP TTWECER*

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MTNGNHVGSG NGGFHSYRRS PQPTPARSPS SDMERSMGMP AHLNQAITEC ITREQDQFMP  60
IANVVRIMRR ILPSHAKISD GSKQTIQECV SEFISFTTLE ANDRCQSEQR KTVTPEDILW  120
AMSKVGFDDY IEPLTLYLNQ YREFDGGESE SLRGETLLVK QQMAHDHGYF VSPPPMDNND  180
MQGDASNGST SQCAVASVDS DIESPAEEGY SRSNAAATLP SPLLGYSRSN AAATLPSPLS  240
GYSRSNAAAT LPSPLSGYSR SNAAATLPSP LSGYSRSNAA ATLPSPLSGY SRSNAAATLP  300
SPLSGYSRSN AAATLPSPLL GYSRSNAAAT LPSPLLGYSR SNAAATPPSP TTWECER*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	6e-52	53	143	7	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc05g005380.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC204082	0.0	Solanum lycopersicum cv. Heinz 1706, chromosome 5 BAC clone C05SLe0086I08, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010320573.1	1e-158	nuclear transcription factor Y subunit B-6-like
STRING	Solyc05g005380.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA111	24	356
Representative plant	OGRP168	17	170

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.1	8e-59	nuclear factor Y, subunit B6

Link Out ? help Back to Top
Phytozome	Solyc05g005380.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]