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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Solyc04g078300.2.1 |
Common Name | LOC101257367 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
MIKC_MADS |
Protein Properties |
Length: 335aa MW: 38130.7 Da PI: 5.9615 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc04g078300.2.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 90 | 1.2e-28 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
k+ien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g++ ++s
Solyc04g078300.2.1 9 KKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRVSTFS 58
68***********************************************8 PP
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2 | K-box | 17.4 | 1.8e-07 | 102 | 174 | 1 | 74 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnelll 74
yq+ s+ s +++ e+ qqe+ + k ++e ++r +R + G e ++ e q e+ L++ lk++ ++K+ +l
Solyc04g078300.2.1 102 YQAPSSPSSVDSHIEEFQQEIIRYKTQVEDMERRLRMYEGGFCEITTVCEAQYREEILQETLKQVQARKQ-VLE 174
5666777788999******************************************************995.444 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 335 aa
Download sequence Send
to blast |
MGRVKLQIKK IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRVSTFSGN 60 KSIEDIMARY VNLPEHDRGR LHNQEHLQRA IAKLKCEADR TYQAPSSPSS VDSHIEEFQQ 120 EIIRYKTQVE DMERRLRMYE GGFCEITTVC EAQYREEILQ ETLKQVQARK QVLEENYHSP 180 QTQNTTQPQM DFSGQNVNMV NNVATSDAIA NSTFMDWVPH SQRDPHVQIL NFLDSSGLLP 240 FRDEADQHML PPSLNQLHGV NVPAGTDHLS SNSRFDQNNP PRPSSFDGII DVNNAPWPPL 300 YTTGDDPFPV SQPRERAILE LFLSQLTPVN QDHI*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1tqe_P | 6e-16 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 6e-16 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
1tqe_R | 6e-16 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
1tqe_S | 6e-16 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_A | 6e-16 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_B | 6e-16 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_C | 6e-16 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_D | 6e-16 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_E | 6e-16 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_F | 6e-16 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
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