PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ERF

Protein Properties

Length: 265aa MW: 29534.2 Da PI: 7.2353

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc04g072900.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	64.1	2.9e-20	84	133	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ l+g Solyc04g072900.1.1 84 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYMLRG 133 59****9.******965...5********************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.28E-32	83	141	No hit	No description
Gene3D	G3DSA:3.30.730.10	3.0E-32	84	142	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.721	84	141	IPR001471	AP2/ERF domain
SMART	SM00380	7.5E-37	84	147	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.92E-23	84	142	IPR016177	DNA-binding domain
Pfam	PF00847	4.1E-14	85	133	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.1E-11	85	96	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.1E-11	107	123	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009409	Biological Process	response to cold
GO:0009414	Biological Process	response to water deprivation
GO:0009611	Biological Process	response to wounding
GO:0009736	Biological Process	cytokinin-activated signaling pathway
GO:0009873	Biological Process	ethylene-activated signaling pathway
GO:0010017	Biological Process	red or far-red light signaling pathway
GO:0045595	Biological Process	regulation of cell differentiation
GO:0071472	Biological Process	cellular response to salt stress
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MNSQIFSTGF SGYGMEQQGS IGLNQLTPIQ IQQIQAQINF QNQQQQQQQQ MMLQTAHHAS 60 TMNFLAPKPV PMKQSGSPPK PTKLYRGVRQ RHWGKWVAEI RLPKNRTRLW LGTFDTAEEA 120 ALAYDKAAYM LRGDFARLNF PQLRHNGNLI GGDFGEYNPL HSSVDAKLKD ICQSLAQGKS 180 IDSKKKKTKG LSAEKAAVVK MEEEESKTAE VGSESDGSHS GSGGSSPVTE LIFPEFTEEE 240 PTWDMSENFL LQKYPSHEID WASL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	2e-21	83	141	1	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.7739	0.0	callus\| flower\| fruit\| leaf\| root\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in roots and leaves. Also detected in flowers and stems. {ECO:0000269\|PubMed:9192694}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00026	PBM	Transfer from AT1G78080	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc04g072900.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF506825	0.0	Lycopersicon esculentum dehydration-responsive element binding protein 3 (DREB3) mRNA, complete cds

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001234707.1	0.0	dehydration-responsive element binding protein 3
Refseq	XP_015074229.1	0.0	ethylene-responsive transcription factor RAP2-4-like
Swissprot	Q8H1E4	6e-85	RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBL	Q8GZE8	0.0	Q8GZE8_SOLLC; Dehydration-responsive element binding protein 3
STRING	Solyc04g072900.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1610	24	71
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78080.1	3e-59	related to AP2 4

Link Out ? help Back to Top
Phytozome	Solyc04g072900.1.1
Entrez Gene	543714

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM XcisClique: analysis of regulatory bicliques. BMC Bioinformatics, 2006. 7: p. 218 [PMID:16630346] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Iwase A, et al. WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed. J. Plant Res., 2015. 128(3): p. 389-97 [PMID:25810222] Ikeuchi M, et al. PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis. Nat Plants, 2015. 1: p. 15089 [PMID:27250255] Iwase A, et al. WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis. Plant Cell, 2017. 29(1): p. 54-69 [PMID:28011694]